-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_931

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1763, 2035
Sorry, prediction GlimmerHMM_glimmerT_62342-T1 fails validation.
(ATG)	 TG	698-850	GT	TGG
(GCC)	 AG	1763-2035	GT	AGG
-recovered GlimmerHMM_glimmerT_62342-T1, initial, 698, 850
-recovered GlimmerHMM_glimmerT_62342-T1, internal, 1763, 2035
Couldn't classify 33, 51
Sorry, prediction GeneMark_model.108624_t fails validation.
(AGG)	 AG	33-51	GT	AGG
(GTG)	 AG	695-850	GT	TGG
(GCC)	 AG	1763-2035	GT	AGG
(GGG)	 AG	2100-2117	TG	GAT
-recovered GeneMark_model.108624_t, terminal, 2100, 2117
-recovered GeneMark_model.108624_t, internal, 33, 51
-recovered GeneMark_model.108624_t, internal, 695, 850
-recovered GeneMark_model.108624_t, internal, 1763, 2035
Couldn't classify 550, 568
Sorry, prediction Augustus_model.g41443.t1 fails validation.
(GCC)	 AG	550-568	GT	AGG
(GTG)	 AG	695-850	GT	TGG
(GCC)	 AG	1763-2035	GT	AGG
(AAG)	 AG	2912-2923	GT	GAG
-recovered Augustus_model.g41443.t1, terminal, 2912, 2923
-recovered Augustus_model.g41443.t1, internal, 550, 568
-recovered Augustus_model.g41443.t1, internal, 695, 850
-recovered Augustus_model.g41443.t1, internal, 1763, 2035
-recovered Augustus_model.g41443.t1, internal, 2912, 2923
Couldn't classify 187, 285
Couldn't classify 1763, 2035
Sorry, prediction snap_scaffold_931-snap.1-T1 fails validation.
(CGC)	 AG	187-285	GT	ATG
(GTG)	 AG	695-850	GT	TGG
(GCC)	 AG	1763-2035	GT	AGG
-recovered snap_scaffold_931-snap.1-T1, internal, 187, 285
-recovered snap_scaffold_931-snap.1-T1, internal, 695, 850
-recovered snap_scaffold_931-snap.1-T1, internal, 1763, 2035

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1959, 2126
Couldn't classify 3040, 3221
Sorry, prediction snap_scaffold_931-snap.2-T1 fails validation.
(CTC)	 AG	1959-2126	GT	AGG
(GGC)	 AG	2157-2162	GT	TGG
(TTT)	 AG	3040-3221	GT	ACG
-recovered snap_scaffold_931-snap.2-T1, internal, 1959, 2126
-recovered snap_scaffold_931-snap.2-T1, internal, 2157, 2162
-recovered snap_scaffold_931-snap.2-T1, internal, 3040, 3221
Couldn't classify 1106, 1204
Sorry, prediction GeneMark_model.108625_t fails validation.
(GGA)	 AG	1106-1204	GC	GAG
(AGG)	 AG	1231-1251	GT	GGG
(ATG)	 AG	1279-1398	GT	GAG
(TGG)	 AG	1465-1642	CA	GAC
-recovered GeneMark_model.108625_t, initial, 1279, 1398
-recovered GeneMark_model.108625_t, terminal, 1465, 1642
-recovered GeneMark_model.108625_t, internal, 1106, 1204
-recovered GeneMark_model.108625_t, internal, 1231, 1251
-recovered GeneMark_model.108625_t, internal, 1279, 1398

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2035, rend_intergenic: 725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3945
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2035, rend_intergenic: 725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support