-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_93

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106519_t
Couldn't classify 16510, 16702
Sorry, prediction GlimmerHMM_glimmerT_61265-T1 fails validation.
(ATG)	 AG	10975-11004	GT	AGG
(GAC)	 AG	12250-12393	GT	AGG
(ATC)	 AG	13023-13293	GT	AGG
(GTC)	 AG	16510-16702	GT	AGG
-recovered GlimmerHMM_glimmerT_61265-T1, initial, 10975, 11004
-recovered GlimmerHMM_glimmerT_61265-T1, internal, 10975, 11004
-recovered GlimmerHMM_glimmerT_61265-T1, internal, 12250, 12393
-recovered GlimmerHMM_glimmerT_61265-T1, internal, 13023, 13293
-recovered GlimmerHMM_glimmerT_61265-T1, internal, 16510, 16702
Valid prediction for Augustus_model.g40757.t1
Couldn't classify 102, 152
Sorry, prediction GeneMark_model.106516_t fails validation.
(CGA)	 AG	102-152	GT	GAG
(GCC)	 AG	249-275	GT	CGG
(ACA)	 AG	299-313	GT	TGG
(GAG)	 AG	341-472	GT	ACG
(CGG)	 AG	537-575	GT	GGG
(GGT)	 AG	603-663	AC	AGA
-recovered GeneMark_model.106516_t, terminal, 603, 663
-recovered GeneMark_model.106516_t, internal, 102, 152
-recovered GeneMark_model.106516_t, internal, 249, 275
-recovered GeneMark_model.106516_t, internal, 299, 313
-recovered GeneMark_model.106516_t, internal, 341, 472
-recovered GeneMark_model.106516_t, internal, 537, 575
Valid prediction for GeneMark_model.106517_t
Couldn't classify 249, 546
Sorry, prediction snap_scaffold_93-snap.1-T1 fails validation.
(GCC)	 AG	249-546	GT	AGG
(CTC)	 AG	5609-5698	GT	CCG
(TTT)	 AG	8033-8113	GT	GAG
-recovered snap_scaffold_93-snap.1-T1, terminal, 8033, 8113
-recovered snap_scaffold_93-snap.1-T1, internal, 249, 546
-recovered snap_scaffold_93-snap.1-T1, internal, 5609, 5698
-recovered snap_scaffold_93-snap.1-T1, internal, 8033, 8113
Couldn't classify 16510, 16702
Sorry, prediction snap_scaffold_93-snap.2-T1 fails validation.
(ATG)	 AG	10975-11004	GT	AGG
(GAC)	 AG	12250-12393	GT	AGG
(ATC)	 AG	13023-13293	GT	AGG
(GTC)	 AG	16510-16702	GT	AGG
-recovered snap_scaffold_93-snap.2-T1, initial, 10975, 11004
-recovered snap_scaffold_93-snap.2-T1, internal, 10975, 11004
-recovered snap_scaffold_93-snap.2-T1, internal, 12250, 12393
-recovered snap_scaffold_93-snap.2-T1, internal, 13023, 13293
-recovered snap_scaffold_93-snap.2-T1, internal, 16510, 16702

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_93-snap.3-T1
Couldn't classify 299, 355
Sorry, prediction GeneMark_model.106520_t fails validation.
(CCT)	 AG	299-355	GT	GAG
(ACT)	 AG	378-468	GA	GAG
-recovered GeneMark_model.106520_t, terminal, 378, 468
-recovered GeneMark_model.106520_t, internal, 299, 355
Valid prediction for GeneMark_model.106518_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16702, rend_intergenic: 11492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 17386
-exon list size: 51


building trellis

1.9    
3.8    
5.7    
7.5    
9.4    
11.3    
13.2    
15.1    
17.0    
18.9    
20.8    
22.6    
24.5    
26.4    
28.3    
30.2    
32.1    
34.0    
35.8    
37.7    
39.6    
41.5    
43.4    
45.3    
47.2    
49.1    
50.9    
52.8    
54.7    
56.6    
58.5    
60.4    
62.3    
64.2    
66.0    
67.9    
69.8    
71.7    
73.6    
75.5    
77.4    
79.2    
81.1    
83.0    
84.9    
86.8    
88.7    
90.6    
92.5    
94.3    
96.2    
98.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 16702, rend_intergenic: 11492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10974
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 473 - 10974
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support