-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_926

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 904, 1024
Couldn't classify 3784, 3885
Sorry, prediction GeneMark_model.108617_t fails validation.
(CTC)	 AG	904-1024	GT	AGG
(GAC)	 AG	2131-2178	GT	AGG
(ATG)	 AG	2237-2244	GT	TGG
(CTG)	 AG	2447-2588	GT	GAG
(AGA)	 AG	3686-3751	GC	AGG
(ACA)	 AG	3784-3885	GT	TGG
-recovered GeneMark_model.108617_t, initial, 2237, 2244
-recovered GeneMark_model.108617_t, internal, 904, 1024
-recovered GeneMark_model.108617_t, internal, 2131, 2178
-recovered GeneMark_model.108617_t, internal, 2237, 2244
-recovered GeneMark_model.108617_t, internal, 2447, 2588
-recovered GeneMark_model.108617_t, internal, 3686, 3751
-recovered GeneMark_model.108617_t, internal, 3784, 3885
Couldn't classify 854, 1024
Sorry, prediction GlimmerHMM_glimmerT_62341-T1 fails validation.
(GTT)	 AG	854-1024	GT	AGG
(GCT)	 AG	1184-1314	GT	CTG
(ATG)	 AG	1943-2592	TT	AGT
-recovered GlimmerHMM_glimmerT_62341-T1, terminal, 1943, 2592
-recovered GlimmerHMM_glimmerT_62341-T1, internal, 854, 1024
-recovered GlimmerHMM_glimmerT_62341-T1, internal, 1184, 1314
Couldn't classify 436, 624
Sorry, prediction Augustus_model.g41442.t1 fails validation.
(GCT)	 AG	436-624	GT	AGG
(GTT)	 AG	854-1024	GT	AGG
(GCT)	 AG	1184-1333	GT	AAG
(TGT)	 AG	1601-1650	GT	GTG
(ATG)	 AG	1943-2592	TT	AGT
-recovered Augustus_model.g41442.t1, terminal, 1943, 2592
-recovered Augustus_model.g41442.t1, internal, 436, 624
-recovered Augustus_model.g41442.t1, internal, 854, 1024
-recovered Augustus_model.g41442.t1, internal, 1184, 1333
-recovered Augustus_model.g41442.t1, internal, 1601, 1650
Couldn't classify 434, 624
Sorry, prediction pasa_asmbl_55798.p1 fails validation.
(AGG)	 AC	434-624	GT	AGG
(GTT)	 AG	854-1024	GT	AGG
(GCT)	 AG	1184-1333	GT	AAG
(TGT)	 AG	1601-1650	GT	GTG
(ATG)	 AG	1943-2592	TT	AGT
-recovered pasa_asmbl_55798.p1, terminal, 1943, 2592
-recovered pasa_asmbl_55798.p1, internal, 854, 1024
-recovered pasa_asmbl_55798.p1, internal, 1184, 1333
-recovered pasa_asmbl_55798.p1, internal, 1601, 1650
Couldn't classify 436, 624
Couldn't classify 1943, 2583
Sorry, prediction snap_scaffold_926-snap.1-T1 fails validation.
(GCT)	 AG	436-624	GT	AGG
(CTC)	 AG	911-1024	GT	AGG
(GCT)	 AG	1184-1305	GT	TGG
(ATG)	 AG	1943-2583	GT	AGG
add_exon() Sorry, snap_scaffold_926-snap.1-T1 1943-2583-initial-1 is invalid.
-recovered snap_scaffold_926-snap.1-T1, initial, 1943, 2583
-recovered snap_scaffold_926-snap.1-T1, internal, 436, 624
-recovered snap_scaffold_926-snap.1-T1, internal, 911, 1024
-recovered snap_scaffold_926-snap.1-T1, internal, 1184, 1305
-recovered snap_scaffold_926-snap.1-T1, internal, 1943, 2583

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3957
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support