-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_925

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62339-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3718, 3903
Sorry, prediction Augustus_model.g41441.t1 fails validation.
(ATG)	 CA	35-41	GT	GGG
(AGC)	 AG	144-188	GT	TGG
(GAG)	 AG	488-548	GT	AGG
(CCA)	 AG	745-881	GT	TGG
(ACT)	 AG	1691-1756	GT	AGG
(GAC)	 AG	3718-3903	GT	AGG
-recovered Augustus_model.g41441.t1, initial, 35, 41
-recovered Augustus_model.g41441.t1, internal, 144, 188
-recovered Augustus_model.g41441.t1, internal, 488, 548
-recovered Augustus_model.g41441.t1, internal, 745, 881
-recovered Augustus_model.g41441.t1, internal, 1691, 1756
-recovered Augustus_model.g41441.t1, internal, 3718, 3903
Couldn't classify 488, 704
Sorry, prediction snap_scaffold_925-snap.2-T1 fails validation.
(GAG)	 AG	488-704	GT	AGG
(CCA)	 AG	745-910	TT	AGT
-recovered snap_scaffold_925-snap.2-T1, terminal, 745, 910
-recovered snap_scaffold_925-snap.2-T1, internal, 488, 704
Couldn't classify 3718, 3903
Sorry, prediction snap_scaffold_925-snap.1-T1 fails validation.
(ATG)	 AC	1371-1425	GT	AGG
(ACT)	 AG	1691-1756	GT	AGG
(GAC)	 AG	3718-3903	GT	AGG
-recovered snap_scaffold_925-snap.1-T1, initial, 1371, 1425
-recovered snap_scaffold_925-snap.1-T1, internal, 1691, 1756
-recovered snap_scaffold_925-snap.1-T1, internal, 3718, 3903
Couldn't classify 488, 704
Sorry, prediction GlimmerHMM_glimmerT_62340-T1 fails validation.
(GAG)	 AG	488-704	GT	AGG
(CCA)	 AG	745-881	GT	TGG
(ACT)	 AG	1691-1756	GT	AGG
(CTT)	 AG	2134-2198	TA	GAT
-recovered GlimmerHMM_glimmerT_62340-T1, terminal, 2134, 2198
-recovered GlimmerHMM_glimmerT_62340-T1, internal, 488, 704
-recovered GlimmerHMM_glimmerT_62340-T1, internal, 745, 881
-recovered GlimmerHMM_glimmerT_62340-T1, internal, 1691, 1756
Couldn't classify 488, 548
Couldn't classify 3718, 3903
Sorry, prediction GeneMark_model.108616_t fails validation.
(GAG)	 AG	488-548	GT	AGG
(GAG)	 AG	592-600	GT	AGG
(GAG)	 AG	626-685	GT	GAG
(GAG)	 AG	715-881	GT	TGG
(ACT)	 AG	1691-1756	GT	AGG
(GAC)	 AG	3718-3903	GT	AGG
-recovered GeneMark_model.108616_t, internal, 488, 548
-recovered GeneMark_model.108616_t, internal, 592, 600
-recovered GeneMark_model.108616_t, internal, 626, 685
-recovered GeneMark_model.108616_t, internal, 715, 881
-recovered GeneMark_model.108616_t, internal, 1691, 1756
-recovered GeneMark_model.108616_t, internal, 3718, 3903

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3958
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support