-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_923

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 134, 184
Sorry, prediction Augustus_model.g41440.t1 fails validation.
(TCT)	 AG	134-184	GT	CTG
(GAT)	 AG	1436-1545	GT	GGG
(CCC)	 AG	1725-1758	GC	AGG
-recovered Augustus_model.g41440.t1, terminal, 1725, 1758
-recovered Augustus_model.g41440.t1, internal, 134, 184
-recovered Augustus_model.g41440.t1, internal, 1436, 1545
-recovered Augustus_model.g41440.t1, internal, 1725, 1758
Couldn't classify 134, 576
Couldn't classify 2568, 2738
Sorry, prediction snap_scaffold_923-snap.2-T1 fails validation.
(TCT)	 AG	134-576	GT	TTG
(AAG)	 AG	695-905	GT	ATG
(GAT)	 AG	1436-1569	GT	AAG
(ATC)	 AG	2568-2738	GT	TGG
-recovered snap_scaffold_923-snap.2-T1, internal, 134, 576
-recovered snap_scaffold_923-snap.2-T1, internal, 695, 905
-recovered snap_scaffold_923-snap.2-T1, internal, 1436, 1569
-recovered snap_scaffold_923-snap.2-T1, internal, 2568, 2738
Couldn't classify 3140, 3165
Sorry, prediction GeneMark_model.108615_t fails validation.
(ATG)	 GG	2407-2456	GT	AAG
(AAA)	 AG	2499-2508	GT	TGG
(GGT)	 AG	2559-2611	GT	AGG
(AGG)	 AG	2633-2659	GT	AGG
(GAA)	 AG	2699-2782	GT	ATG
(ACA)	 AG	3061-3069	GT	GAG
(AGA)	 AG	3093-3116	GT	CAG
(TGA)	 AG	3140-3165	GT	ACG
-recovered GeneMark_model.108615_t, initial, 2407, 2456
-recovered GeneMark_model.108615_t, internal, 2499, 2508
-recovered GeneMark_model.108615_t, internal, 2559, 2611
-recovered GeneMark_model.108615_t, internal, 2633, 2659
-recovered GeneMark_model.108615_t, internal, 2699, 2782
-recovered GeneMark_model.108615_t, internal, 3061, 3069
-recovered GeneMark_model.108615_t, internal, 3093, 3116
-recovered GeneMark_model.108615_t, internal, 3140, 3165
Couldn't classify 140, 209
Sorry, prediction GeneMark_model.108613_t fails validation.
(CAA)	 AG	140-209	GT	AAG
(GCT)	 AG	710-887	GT	CTG
(GGT)	 AG	1044-1096	GT	CTG
(TCC)	 AG	1465-1545	GT	GGG
(GGC)	 AG	1653-1758	GC	AGG
-recovered GeneMark_model.108613_t, terminal, 1653, 1758
-recovered GeneMark_model.108613_t, internal, 140, 209
-recovered GeneMark_model.108613_t, internal, 710, 887
-recovered GeneMark_model.108613_t, internal, 1044, 1096
-recovered GeneMark_model.108613_t, internal, 1465, 1545
-recovered GeneMark_model.108613_t, internal, 1653, 1758

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108614_t
Valid prediction for GlimmerHMM_glimmerT_62337-T1
Couldn't classify 1739, 1860
Sorry, prediction snap_scaffold_923-snap.1-T1 fails validation.
(TGG)	 AG	1739-1860	GT	ACG
(GGC)	 AG	2433-2622	GT	CAG
(GAC)	 AG	3788-3870	CA	GAC
-recovered snap_scaffold_923-snap.1-T1, terminal, 3788, 3870
-recovered snap_scaffold_923-snap.1-T1, internal, 1739, 1860
-recovered snap_scaffold_923-snap.1-T1, internal, 2433, 2622

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2231, rend_intergenic: 134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3969
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2231, rend_intergenic: 134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support