-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_922

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 33, 76
Couldn't classify 3791, 3830
Sorry, prediction GeneMark_model.108612_t fails validation.
(GGA)	 AG	33-76	GT	TGG
(GAG)	 AG	371-425	GT	GAG
(TGC)	 AG	474-503	GT	GGG
(GGA)	 AG	552-584	GT	ACG
(AGA)	 AG	831-917	GT	GGG
(GAG)	 AG	951-995	GT	GGG
(GAG)	 AG	1026-1332	GT	AGG
(AGA)	 AG	3280-3628	GT	CAG
(TCA)	 AG	3791-3830	GT	CAG
-recovered GeneMark_model.108612_t, terminal, 371, 425
-recovered GeneMark_model.108612_t, internal, 33, 76
-recovered GeneMark_model.108612_t, internal, 371, 425
-recovered GeneMark_model.108612_t, internal, 474, 503
-recovered GeneMark_model.108612_t, internal, 552, 584
-recovered GeneMark_model.108612_t, internal, 831, 917
-recovered GeneMark_model.108612_t, internal, 951, 995
-recovered GeneMark_model.108612_t, internal, 1026, 1332
-recovered GeneMark_model.108612_t, internal, 3280, 3628
-recovered GeneMark_model.108612_t, internal, 3791, 3830
Couldn't classify 371, 503
Couldn't classify 2077, 2144
Sorry, prediction snap_scaffold_922-snap.1-T1 fails validation.
(GAG)	 AG	371-503	GT	GGG
(GCC)	 AG	790-917	GT	GGG
(GTC)	 AG	2077-2144	GT	AGG
-recovered snap_scaffold_922-snap.1-T1, internal, 371, 503
-recovered snap_scaffold_922-snap.1-T1, internal, 790, 917
-recovered snap_scaffold_922-snap.1-T1, internal, 2077, 2144

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3971
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support