-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_921

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_921-snap.1-T1
Valid prediction for snap_scaffold_921-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 334, 345
Couldn't classify 3408, 3537
Sorry, prediction GeneMark_model.108611_t fails validation.
(GAG)	 AG	334-345	GT	GAG
(GGG)	 AG	367-372	GT	GAG
(AGA)	 AG	396-443	GT	GAG
(GAG)	 AG	474-485	GT	GAG
(GAG)	 AG	507-551	GT	GAG
(AGG)	 AG	573-596	GT	GAG
(CAA)	 AG	618-668	GC	AGG
(ACA)	 AG	1778-1822	GT	GGG
(ACA)	 AG	1849-1875	GT	GAG
(AGA)	 AG	1899-1949	GC	GAG
(AGA)	 AG	1971-2057	GC	AAG
(TTA)	 AG	2145-2153	GT	GGG
(GAT)	 AG	3408-3537	GT	AGG
-recovered GeneMark_model.108611_t, internal, 334, 345
-recovered GeneMark_model.108611_t, internal, 367, 372
-recovered GeneMark_model.108611_t, internal, 396, 443
-recovered GeneMark_model.108611_t, internal, 474, 485
-recovered GeneMark_model.108611_t, internal, 507, 551
-recovered GeneMark_model.108611_t, internal, 573, 596
-recovered GeneMark_model.108611_t, internal, 618, 668
-recovered GeneMark_model.108611_t, internal, 1778, 1822
-recovered GeneMark_model.108611_t, internal, 1849, 1875
-recovered GeneMark_model.108611_t, internal, 1899, 1949
-recovered GeneMark_model.108611_t, internal, 1971, 2057
-recovered GeneMark_model.108611_t, internal, 2145, 2153
-recovered GeneMark_model.108611_t, internal, 3408, 3537
Valid prediction for snap_scaffold_921-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2965, rend_intergenic: 2278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3977
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2965, rend_intergenic: 2278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support