-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_920

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108609_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62336-T1
Valid prediction for snap_scaffold_920-snap.1-T1
Couldn't classify 781, 813
Sorry, prediction GeneMark_model.108610_t fails validation.
(GAG)	 AG	781-813	GT	GGG
(GAG)	 AG	838-1080	GC	GGG
(AGG)	 AG	1106-1121	GT	GTG
(GAT)	 AG	1148-1170	GT	AGG
(AGG)	 AG	1193-1226	GT	AGG
(GTG)	 AG	1245-1261	GT	GAG
(GAA)	 AG	1293-1469	GT	ATG
(GAG)	 AG	1496-1547	GT	CAG
(GGC)	 AG	1636-1652	GT	AGG
(GCG)	 AG	1680-1688	GT	AGG
(GGA)	 AG	1717-1737	GT	AGG
(GGA)	 AG	1766-1775	GG	AGG
-recovered GeneMark_model.108610_t, terminal, 1766, 1775
-recovered GeneMark_model.108610_t, internal, 781, 813
-recovered GeneMark_model.108610_t, internal, 838, 1080
-recovered GeneMark_model.108610_t, internal, 1106, 1121
-recovered GeneMark_model.108610_t, internal, 1148, 1170
-recovered GeneMark_model.108610_t, internal, 1193, 1226
-recovered GeneMark_model.108610_t, internal, 1245, 1261
-recovered GeneMark_model.108610_t, internal, 1293, 1469
-recovered GeneMark_model.108610_t, internal, 1496, 1547
-recovered GeneMark_model.108610_t, internal, 1636, 1652
-recovered GeneMark_model.108610_t, internal, 1680, 1688
-recovered GeneMark_model.108610_t, internal, 1717, 1737

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3978
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support