-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_92

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106510_t
Valid prediction for GlimmerHMM_glimmerT_61263-T1
Valid prediction for snap_scaffold_92-snap.1-T1
Valid prediction for Augustus_model.g40755.t1
Valid prediction for GlimmerHMM_glimmerT_61262-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61262-T1 8832-9604-terminal-1 is invalid.
Valid prediction for snap_scaffold_92-snap.2-T1
Valid prediction for GeneMark_model.106514_t
Valid prediction for GeneMark_model.106512_t
Valid prediction for snap_scaffold_92-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61264-T1
Valid prediction for GeneMark_model.106511_t
Valid prediction for GeneMark_model.106513_t
Valid prediction for GeneMark_model.106515_t
Valid prediction for Augustus_model.g40756.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 17398
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 4 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support