-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_919

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3848, 3931
Sorry, prediction GeneMark_model.108608_t fails validation.
(ATG)	 GA	3511-3593	GT	GAG
(AGA)	 AG	3619-3666	GT	CAG
(AGA)	 AG	3716-3721	GT	GGG
(GGA)	 AG	3747-3794	GT	ATG
(ACA)	 AG	3848-3931	GT	CTG
-recovered GeneMark_model.108608_t, initial, 3511, 3593
-recovered GeneMark_model.108608_t, internal, 3619, 3666
-recovered GeneMark_model.108608_t, internal, 3716, 3721
-recovered GeneMark_model.108608_t, internal, 3747, 3794
-recovered GeneMark_model.108608_t, internal, 3848, 3931
Valid prediction for GeneMark_model.108606_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 570, 878
Couldn't classify 2184, 2594
Sorry, prediction snap_scaffold_919-snap.1-T1 fails validation.
(GAT)	 AG	570-878	GT	GTG
(CTT)	 AG	2184-2594	GT	CTG
-recovered snap_scaffold_919-snap.1-T1, internal, 570, 878
-recovered snap_scaffold_919-snap.1-T1, internal, 2184, 2594
Valid prediction for GeneMark_model.108605_t
Valid prediction for GeneMark_model.108607_t
Valid prediction for GlimmerHMM_glimmerT_62335-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3980
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support