-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_917

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 15, 146
Sorry, prediction GeneMark_model.108602_t fails validation.
(GTA)	 AG	15-146	GT	CAG
(AGG)	 AG	184-286	GT	AGG
(GTG)	 AG	328-462	GT	AGG
(GCG)	 AG	558-704	GT	AGG
(GAC)	 AG	3040-3153	GT	AGG
(CCC)	 AG	3198-3236	GC	AAG
-recovered GeneMark_model.108602_t, terminal, 3198, 3236
-recovered GeneMark_model.108602_t, internal, 15, 146
-recovered GeneMark_model.108602_t, internal, 184, 286
-recovered GeneMark_model.108602_t, internal, 328, 462
-recovered GeneMark_model.108602_t, internal, 558, 704
-recovered GeneMark_model.108602_t, internal, 3040, 3153
-recovered GeneMark_model.108602_t, internal, 3198, 3236
Couldn't classify 1, 165
Couldn't classify 3888, 3980
Sorry, prediction Augustus_model.g41438.t1 fails validation.
(GTG)	 TG	1-165	GT	AGG
(GTG)	 AG	328-462	GT	AGG
(GCG)	 AG	558-704	GT	AGG
(GAC)	 AG	3040-3153	GT	AGG
(GTG)	 AG	3698-3811	GT	AGG
(AAA)	 AG	3888-3980		TG
-recovered Augustus_model.g41438.t1, internal, 328, 462
-recovered Augustus_model.g41438.t1, internal, 558, 704
-recovered Augustus_model.g41438.t1, internal, 3040, 3153
-recovered Augustus_model.g41438.t1, internal, 3698, 3811
Couldn't classify 95, 165
Couldn't classify 3888, 3977
Sorry, prediction snap_scaffold_917-snap.1-T1 fails validation.
(GAA)	 AG	95-165	GT	AGG
(GTG)	 AG	328-462	GT	AGG
(GCG)	 AG	558-704	GT	AGG
(GAC)	 AG	3040-3153	GT	AGG
(GTG)	 AG	3698-3811	GT	AGG
(AAA)	 AG	3888-3977	GT	AGG
-recovered snap_scaffold_917-snap.1-T1, internal, 95, 165
-recovered snap_scaffold_917-snap.1-T1, internal, 328, 462
-recovered snap_scaffold_917-snap.1-T1, internal, 558, 704
-recovered snap_scaffold_917-snap.1-T1, internal, 3040, 3153
-recovered snap_scaffold_917-snap.1-T1, internal, 3698, 3811
-recovered snap_scaffold_917-snap.1-T1, internal, 3888, 3977
Couldn't classify 3888, 3980
Sorry, prediction GlimmerHMM_glimmerT_62334-T1 fails validation.
(ATG)	 TG	331-462	GT	AGG
(GCG)	 AG	558-704	GT	AGG
(GAC)	 AG	3040-3153	GT	AGG
(GTG)	 AG	3698-3811	GT	AGG
(AAA)	 AG	3888-3980		TG
-recovered GlimmerHMM_glimmerT_62334-T1, initial, 331, 462
-recovered GlimmerHMM_glimmerT_62334-T1, internal, 558, 704
-recovered GlimmerHMM_glimmerT_62334-T1, internal, 3040, 3153
-recovered GlimmerHMM_glimmerT_62334-T1, internal, 3698, 3811

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 176, 286
Couldn't classify 3290, 3409
Sorry, prediction snap_scaffold_917-snap.2-T1 fails validation.
(GTT)	 AG	176-286	GT	TGG
(AGC)	 AG	843-915	GT	GGG
(AAT)	 AG	3290-3409	GT	CTG
-recovered snap_scaffold_917-snap.2-T1, internal, 176, 286
-recovered snap_scaffold_917-snap.2-T1, internal, 843, 915
-recovered snap_scaffold_917-snap.2-T1, internal, 3290, 3409
Couldn't classify 44, 108
Sorry, prediction GeneMark_model.108603_t fails validation.
(AAG)	 AG	44-108	GT	GAG
(ACA)	 AG	312-458	GT	GAG
(GGA)	 AG	488-571	GT	AGG
(AAA)	 AG	595-627	GT	TGG
(GGG)	 AG	653-667	GT	TGG
(GGG)	 AG	693-708	TG	GAT
-recovered GeneMark_model.108603_t, terminal, 693, 708
-recovered GeneMark_model.108603_t, internal, 44, 108
-recovered GeneMark_model.108603_t, internal, 312, 458
-recovered GeneMark_model.108603_t, internal, 488, 571
-recovered GeneMark_model.108603_t, internal, 595, 627
-recovered GeneMark_model.108603_t, internal, 653, 667

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3977, rend_intergenic: 572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3980
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3977, rend_intergenic: 572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support