-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_916

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 67
Sorry, prediction Augustus_model.g41437.t1 fails validation.
(CCC)	 CC	1-67	GT	GGG
(TGT)	 AG	1063-1212	CA	AGC
-recovered Augustus_model.g41437.t1, terminal, 1063, 1212

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 146, 182
Sorry, prediction GeneMark_model.108601_t fails validation.
(GGG)	 AG	146-182	GT	AGG
(GGG)	 AG	1292-1366	GT	TGG
(TGG)	 AG	1542-1559	GT	AAG
(GAC)	 AG	1817-1897	GT	GCG
(GGG)	 AG	2441-2487	GT	TGG
(AAC)	 AG	3134-3155	GT	GGG
(AGA)	 AG	3283-3357	GT	GGG
(TGA)	 AG	3380-3434	AG	AGA
-recovered GeneMark_model.108601_t, terminal, 3380, 3434
-recovered GeneMark_model.108601_t, internal, 146, 182
-recovered GeneMark_model.108601_t, internal, 1292, 1366
-recovered GeneMark_model.108601_t, internal, 1542, 1559
-recovered GeneMark_model.108601_t, internal, 1817, 1897
-recovered GeneMark_model.108601_t, internal, 2441, 2487
-recovered GeneMark_model.108601_t, internal, 3134, 3155
-recovered GeneMark_model.108601_t, internal, 3283, 3357

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3989
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support