-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_915

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 348, 468
Sorry, prediction Augustus_model.g41436.t1 fails validation.
(GAA)	 AG	348-468	GT	GGG
(CGT)	 AG	1038-1127	GG	GAG
-recovered Augustus_model.g41436.t1, terminal, 1038, 1127
-recovered Augustus_model.g41436.t1, internal, 348, 468
Couldn't classify 348, 468
Couldn't classify 1587, 2209
Sorry, prediction snap_scaffold_915-snap.1-T1 fails validation.
(GAA)	 AG	348-468	GT	GGG
(CGT)	 AG	1064-1341	GT	ACG
(CTG)	 AG	1587-2209	GT	TCG
-recovered snap_scaffold_915-snap.1-T1, internal, 348, 468
-recovered snap_scaffold_915-snap.1-T1, internal, 1064, 1341
-recovered snap_scaffold_915-snap.1-T1, internal, 1587, 2209

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 35, 193
Couldn't classify 3516, 3806
Sorry, prediction GeneMark_model.108600_t fails validation.
(AAG)	 AG	35-193	GT	CTG
(AGA)	 AG	1041-1229	GT	CGG
(AGG)	 AG	1261-1266	GT	AGG
(AGG)	 AG	1290-1295	GT	GAG
(AGG)	 AG	1327-1353	GT	AAG
(GAG)	 AG	1380-1460	GT	GAG
(AAG)	 AG	1483-1551	GT	GAG
(AGA)	 AG	1575-1802	GT	CAG
(GCA)	 AG	1831-1857	GT	GGG
(GGT)	 AG	1879-1923	GT	GGG
(GGT)	 AG	1945-1956	GT	ACG
(GCA)	 AG	1985-2029	GT	GGG
(AGA)	 AG	2125-2142	GT	AGG
(GCA)	 AG	2180-2284	GT	AGG
(GCA)	 AG	2344-2394	GT	CCG
(GGA)	 AG	2420-2434	GT	AGG
(AGA)	 AG	2529-2543	GT	GGG
(GGT)	 AG	2565-2579	GT	GCG
(AGA)	 AG	2602-2616	GT	GGG
(GGT)	 AG	2638-2649	GT	ACG
(GCA)	 AG	2678-2704	GT	GGG
(GGT)	 AG	2726-2935	GT	GAG
(AGG)	 AG	2983-3261	GT	AGG
(GGG)	 AG	3283-3294	GT	AGG
(GAG)	 AG	3321-3395	GT	AGG
(GGA)	 AG	3422-3463	GT	GGG
(GTC)	 AG	3516-3806	GT	CAG
-recovered GeneMark_model.108600_t, internal, 35, 193
-recovered GeneMark_model.108600_t, internal, 1041, 1229
-recovered GeneMark_model.108600_t, internal, 1261, 1266
-recovered GeneMark_model.108600_t, internal, 1290, 1295
-recovered GeneMark_model.108600_t, internal, 1327, 1353
-recovered GeneMark_model.108600_t, internal, 1380, 1460
-recovered GeneMark_model.108600_t, internal, 1483, 1551
-recovered GeneMark_model.108600_t, internal, 1575, 1802
-recovered GeneMark_model.108600_t, internal, 1831, 1857
-recovered GeneMark_model.108600_t, internal, 1879, 1923
-recovered GeneMark_model.108600_t, internal, 1945, 1956
-recovered GeneMark_model.108600_t, internal, 1985, 2029
-recovered GeneMark_model.108600_t, internal, 2125, 2142
-recovered GeneMark_model.108600_t, internal, 2180, 2284
-recovered GeneMark_model.108600_t, internal, 2344, 2394
-recovered GeneMark_model.108600_t, internal, 2420, 2434
-recovered GeneMark_model.108600_t, internal, 2529, 2543
-recovered GeneMark_model.108600_t, internal, 2565, 2579
-recovered GeneMark_model.108600_t, internal, 2602, 2616
-recovered GeneMark_model.108600_t, internal, 2638, 2649
-recovered GeneMark_model.108600_t, internal, 2678, 2704
-recovered GeneMark_model.108600_t, internal, 2726, 2935
-recovered GeneMark_model.108600_t, internal, 2983, 3261
-recovered GeneMark_model.108600_t, internal, 3283, 3294
-recovered GeneMark_model.108600_t, internal, 3321, 3395
-recovered GeneMark_model.108600_t, internal, 3422, 3463
-recovered GeneMark_model.108600_t, internal, 3516, 3806
Valid prediction for GlimmerHMM_glimmerT_62333-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3990
-exon list size: 63


building trellis

1.5    
3.1    
4.6    
6.2    
7.7    
9.2    
10.8    
12.3    
13.8    
15.4    
16.9    
18.5    
20.0    
21.5    
23.1    
24.6    
26.2    
27.7    
29.2    
30.8    
32.3    
33.8    
35.4    
36.9    
38.5    
40.0    
41.5    
43.1    
44.6    
46.2    
47.7    
49.2    
50.8    
52.3    
53.8    
55.4    
56.9    
58.5    
60.0    
61.5    
63.1    
64.6    
66.2    
67.7    
69.2    
70.8    
72.3    
73.8    
75.4    
76.9    
78.5    
80.0    
81.5    
83.1    
84.6    
86.2    
87.7    
89.2    
90.8    
92.3    
93.8    
95.4    
96.9    
98.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support