-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_912

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3504, 3518
Sorry, prediction GeneMark_model.108596_t fails validation.
(ATG)	 AG	3114-3127	GT	AGG
(GGC)	 AG	3283-3336	GT	ATG
(GGA)	 AG	3370-3381	GC	AGG
(AGT)	 AG	3413-3481	GT	GAG
(TGA)	 AG	3504-3518	GT	GAG
-recovered GeneMark_model.108596_t, initial, 3114, 3127
-recovered GeneMark_model.108596_t, internal, 3114, 3127
-recovered GeneMark_model.108596_t, internal, 3283, 3336
-recovered GeneMark_model.108596_t, internal, 3370, 3381
-recovered GeneMark_model.108596_t, internal, 3413, 3481
-recovered GeneMark_model.108596_t, internal, 3504, 3518
Couldn't classify 206, 220
Sorry, prediction GeneMark_model.108595_t fails validation.
(AGT)	 AG	206-220	GT	GGG
(AGT)	 AG	267-272	GT	AGG
(AAA)	 AG	301-312	GT	GAG
(AAA)	 AG	335-343	GT	GAG
(AGA)	 AG	377-397	GC	GAG
(AGA)	 AG	421-433	GT	GGG
(AAG)	 AG	608-690	GT	GAG
(AAG)	 AG	721-754	TA	GAT
-recovered GeneMark_model.108595_t, terminal, 721, 754
-recovered GeneMark_model.108595_t, internal, 206, 220
-recovered GeneMark_model.108595_t, internal, 267, 272
-recovered GeneMark_model.108595_t, internal, 301, 312
-recovered GeneMark_model.108595_t, internal, 335, 343
-recovered GeneMark_model.108595_t, internal, 377, 397
-recovered GeneMark_model.108595_t, internal, 421, 433
-recovered GeneMark_model.108595_t, internal, 608, 690

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3815, 3881
Sorry, prediction snap_scaffold_912-snap.1-T1 fails validation.
(ATG)	 CC	22-128	GT	TGG
(GGC)	 AG	3161-3265	GT	AGG
(TCG)	 AG	3815-3881	GT	AAG
-recovered snap_scaffold_912-snap.1-T1, initial, 22, 128
-recovered snap_scaffold_912-snap.1-T1, internal, 3161, 3265
-recovered snap_scaffold_912-snap.1-T1, internal, 3815, 3881

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4000
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support