-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_910

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62331-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 453, 1005
Sorry, prediction snap_scaffold_910-snap.1-T1 fails validation.
(GAA)	 AG	453-1005	GT	GAG
(GTG)	 AG	3715-3745	GT	GAG
-recovered snap_scaffold_910-snap.1-T1, terminal, 3715, 3745
-recovered snap_scaffold_910-snap.1-T1, internal, 453, 1005
-recovered snap_scaffold_910-snap.1-T1, internal, 3715, 3745
Couldn't classify 314, 331
Sorry, prediction GeneMark_model.108594_t fails validation.
(CAG)	 AG	314-331	GT	AGG
(CAG)	 AG	363-999	AG	AGA
-recovered GeneMark_model.108594_t, terminal, 363, 999
-recovered GeneMark_model.108594_t, internal, 314, 331

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4000
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support