-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_91

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106509_t
Valid prediction for snap_scaffold_91-snap.4-T1
Couldn't classify 836, 1057
Sorry, prediction snap_scaffold_91-snap.1-T1 fails validation.
(ATT)	 AG	836-1057	GT	AGG
(GCT)	 AG	7549-7576	TG	AAT
-recovered snap_scaffold_91-snap.1-T1, terminal, 7549, 7576
-recovered snap_scaffold_91-snap.1-T1, internal, 836, 1057
Valid prediction for snap_scaffold_91-snap.3-T1
Couldn't classify 895, 999
Couldn't classify 1023, 1093
Sorry, prediction GeneMark_model.106505_t fails validation.
(GAG)	 AG	895-999	GT	AGG
(AGA)	 AG	1023-1093	GT	AGG
-recovered GeneMark_model.106505_t, internal, 895, 999
-recovered GeneMark_model.106505_t, internal, 1023, 1093
Valid prediction for GeneMark_model.106507_t
Valid prediction for snap_scaffold_91-snap.5-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4274, 4431
Sorry, prediction snap_scaffold_91-snap.2-T1 fails validation.
(GCT)	 AG	4274-4431	GT	AGG
(GTA)	 AG	4485-4514	GT	ATG
(AAT)	 AG	4600-5589	GT	AGG
(GCC)	 AG	5960-6027	GT	GGG
(ATC)	 AG	7705-7790	GT	TGG
(ACC)	 AG	8418-8800	AC	AGA
-recovered snap_scaffold_91-snap.2-T1, terminal, 8418, 8800
-recovered snap_scaffold_91-snap.2-T1, internal, 4274, 4431
-recovered snap_scaffold_91-snap.2-T1, internal, 4485, 4514
-recovered snap_scaffold_91-snap.2-T1, internal, 4600, 5589
-recovered snap_scaffold_91-snap.2-T1, internal, 5960, 6027
-recovered snap_scaffold_91-snap.2-T1, internal, 7705, 7790
Valid prediction for GeneMark_model.106506_t
Valid prediction for Augustus_model.g40754.t1
Couldn't classify 4131, 4353
Sorry, prediction GlimmerHMM_glimmerT_61261-T1 fails validation.
(TCC)	 AG	4131-4353	GT	TGG
(CCT)	 AG	8545-8800	AC	AGA
-recovered GlimmerHMM_glimmerT_61261-T1, terminal, 8545, 8800
-recovered GlimmerHMM_glimmerT_61261-T1, internal, 4131, 4353
Valid prediction for Augustus_model.g40753.t1
Valid prediction for GeneMark_model.106508_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13330, rend_intergenic: 8970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 17603
-exon list size: 56


building trellis

1.7    
3.4    
5.2    
6.9    
8.6    
10.3    
12.1    
13.8    
15.5    
17.2    
19.0    
20.7    
22.4    
24.1    
25.9    
27.6    
29.3    
31.0    
32.8    
34.5    
36.2    
37.9    
39.7    
41.4    
43.1    
44.8    
46.6    
48.3    
50.0    
51.7    
53.4    
55.2    
56.9    
58.6    
60.3    
62.1    
63.8    
65.5    
67.2    
69.0    
70.7    
72.4    
74.1    
75.9    
77.6    
79.3    
81.0    
82.8    
84.5    
86.2    
87.9    
89.7    
91.4    
93.1    
94.8    
96.6    
98.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 13330, rend_intergenic: 8970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support