-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_909

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3904, 4000
Sorry, prediction Augustus_model.g41435.t1 fails validation.
(ATG)	 AA	3255-3267	GT	TGG
(CTG)	 AG	3904-4000		GG
-recovered Augustus_model.g41435.t1, initial, 3255, 3267

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 116, 223
Sorry, prediction GeneMark_model.108592_t fails validation.
(GAG)	 AG	116-223	GT	GAG
(GAG)	 AG	247-326	GT	GCG
(AGT)	 AG	860-881	GT	AAG
(ACG)	 AG	1706-1718	TG	AAT
-recovered GeneMark_model.108592_t, terminal, 1706, 1718
-recovered GeneMark_model.108592_t, internal, 116, 223
-recovered GeneMark_model.108592_t, internal, 247, 326
-recovered GeneMark_model.108592_t, internal, 860, 881
Couldn't classify 91, 305
Sorry, prediction snap_scaffold_909-snap.1-T1 fails validation.
(ATC)	 AG	91-305	GT	CCG
(ATA)	 AG	701-720	AA	AGA
-recovered snap_scaffold_909-snap.1-T1, terminal, 701, 720
-recovered snap_scaffold_909-snap.1-T1, internal, 91, 305

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4000
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support