-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_907

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3930, 3938
Sorry, prediction GeneMark_model.108589_t fails validation.
(ATG)	 TA	3455-3498	GT	GGG
(GAA)	 AG	3675-3839	GT	GGG
(GAG)	 AG	3870-3899	GT	GGG
(GGG)	 AG	3930-3938	GT	GGG
-recovered GeneMark_model.108589_t, initial, 3455, 3498
-recovered GeneMark_model.108589_t, internal, 3675, 3839
-recovered GeneMark_model.108589_t, internal, 3870, 3899
-recovered GeneMark_model.108589_t, internal, 3930, 3938
Valid prediction for snap_scaffold_907-snap.1-T1
add_exon() Sorry, snap_scaffold_907-snap.1-T1 400-707-terminal-1 is invalid.
Couldn't classify 3647, 3899
Sorry, prediction snap_scaffold_907-snap.2-T1 fails validation.
(ATG)	 AT	1652-1863	GT	AGG
(AAG)	 AG	3647-3899	GT	GGG
-recovered snap_scaffold_907-snap.2-T1, initial, 1652, 1863
-recovered snap_scaffold_907-snap.2-T1, internal, 3647, 3899
Valid prediction for GlimmerHMM_glimmerT_62328-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62328-T1 451-707-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1434, 1575
Sorry, prediction snap_scaffold_907-snap.3-T1 fails validation.
(ACT)	 AG	1434-1575	GT	AAG
(GGC)	 AG	1996-2284	CG	AGC
-recovered snap_scaffold_907-snap.3-T1, terminal, 1996, 2284
-recovered snap_scaffold_907-snap.3-T1, internal, 1434, 1575
Valid prediction for GeneMark_model.108588_t
Couldn't classify 1434, 1552
Sorry, prediction GlimmerHMM_glimmerT_62329-T1 fails validation.
(ACT)	 AG	1434-1552	GT	AGG
(GGC)	 AG	1996-2136	CC	GAC
-recovered GlimmerHMM_glimmerT_62329-T1, terminal, 1996, 2136
-recovered GlimmerHMM_glimmerT_62329-T1, internal, 1434, 1552

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3899, rend_intergenic: 1717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4000
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3899, rend_intergenic: 1717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support