-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_906

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 40, 96
Sorry, prediction GeneMark_model.108586_t fails validation.
(GAG)	 AG	40-96	GT	AGG
(GCG)	 AG	152-244	GT	AGG
(AGA)	 AG	272-313	GT	CAG
(GCG)	 AG	355-366	GT	CAG
(GGC)	 AG	395-425	GC	GAG
-recovered GeneMark_model.108586_t, terminal, 395, 425
-recovered GeneMark_model.108586_t, internal, 40, 96
-recovered GeneMark_model.108586_t, internal, 152, 244
-recovered GeneMark_model.108586_t, internal, 272, 313
-recovered GeneMark_model.108586_t, internal, 355, 366
-recovered GeneMark_model.108586_t, internal, 395, 425

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 41, 91
Sorry, prediction GeneMark_model.108587_t fails validation.
(GGC)	 AG	41-91	GT	GAG
(AGG)	 AG	2924-2929	GT	GGG
(GTT)	 AG	2952-3039	GT	ATG
(GAG)	 AG	3362-3384	GT	GGG
(GGG)	 AG	3405-3522	TT	AAT
-recovered GeneMark_model.108587_t, terminal, 3405, 3522
-recovered GeneMark_model.108587_t, internal, 41, 91
-recovered GeneMark_model.108587_t, internal, 2924, 2929
-recovered GeneMark_model.108587_t, internal, 2952, 3039
-recovered GeneMark_model.108587_t, internal, 3362, 3384

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4000
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support