-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_905

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_905-snap.1-T1
add_exon() Sorry, snap_scaffold_905-snap.1-T1 40-385-terminal-1 is invalid.
Couldn't classify 40, 189
Sorry, prediction GeneMark_model.108584_t fails validation.
(ATC)	 AG	40-189	GT	AGG
(AGT)	 AG	213-426	AA	AAA
-recovered GeneMark_model.108584_t, terminal, 213, 426
-recovered GeneMark_model.108584_t, internal, 40, 189

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 731, 759
Sorry, prediction GeneMark_model.108585_t fails validation.
(GGT)	 AG	731-759	GT	TGG
(TCC)	 AG	1256-1305	GT	GAG
(CCC)	 AG	3076-3165	GT	CGG
(GGC)	 AG	3487-3512	GT	GAG
add_exon() Sorry, GeneMark_model.108585_t 1256-1305-terminal-2 is invalid.
-recovered GeneMark_model.108585_t, terminal, 1256, 1305
-recovered GeneMark_model.108585_t, terminal, 3487, 3512
-recovered GeneMark_model.108585_t, internal, 731, 759
-recovered GeneMark_model.108585_t, internal, 1256, 1305
-recovered GeneMark_model.108585_t, internal, 3076, 3165
-recovered GeneMark_model.108585_t, internal, 3487, 3512

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4000
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support