-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_904

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 46
Sorry, prediction GeneMark_model.108581_t fails validation.
(CTG)	 AG	35-46	GT	AAG
(ATT)	 AG	162-305	GT	GAG
(CTC)	 AG	335-354	GT	TGG
(ATG)	 AG	478-533	GG	GAG
-recovered GeneMark_model.108581_t, terminal, 35, 46
-recovered GeneMark_model.108581_t, terminal, 478, 533
-recovered GeneMark_model.108581_t, internal, 35, 46
-recovered GeneMark_model.108581_t, internal, 162, 305
-recovered GeneMark_model.108581_t, internal, 335, 354
Couldn't classify 162, 297
Couldn't classify 3242, 3318
Sorry, prediction snap_scaffold_904-snap.1-T1 fails validation.
(ATT)	 AG	162-297	GT	CTG
(GAT)	 AG	2162-2386	GT	AGG
(GTG)	 AG	3038-3136	GT	ATG
(TCA)	 AG	3242-3318	GT	AAG
-recovered snap_scaffold_904-snap.1-T1, internal, 162, 297
-recovered snap_scaffold_904-snap.1-T1, internal, 2162, 2386
-recovered snap_scaffold_904-snap.1-T1, internal, 3038, 3136
-recovered snap_scaffold_904-snap.1-T1, internal, 3242, 3318
Valid prediction for Augustus_model.g41432.t1
Couldn't classify 3841, 3888
Sorry, prediction GeneMark_model.108583_t fails validation.
(ATG)	 CC	2168-2262	GT	CAG
(GGG)	 AG	2554-2595	GT	GTG
(GGT)	 AG	2646-2702	GT	GGG
(GAT)	 AG	2723-2744	GT	GGG
(GTG)	 AG	3038-3136	GT	ATG
(TCA)	 AG	3242-3318	GT	AAG
(GAA)	 AG	3350-3412	GT	TGG
(GGG)	 AG	3457-3468	GT	AGG
(AAG)	 AG	3490-3618	GT	GAG
(TGC)	 AG	3660-3725	GT	GGG
(GGT)	 AG	3748-3777	GT	GGG
(GGG)	 AG	3806-3817	GT	CAG
(GGG)	 AG	3841-3888	GT	AGG
-recovered GeneMark_model.108583_t, initial, 2168, 2262
-recovered GeneMark_model.108583_t, internal, 2554, 2595
-recovered GeneMark_model.108583_t, internal, 2646, 2702
-recovered GeneMark_model.108583_t, internal, 2723, 2744
-recovered GeneMark_model.108583_t, internal, 3038, 3136
-recovered GeneMark_model.108583_t, internal, 3242, 3318
-recovered GeneMark_model.108583_t, internal, 3350, 3412
-recovered GeneMark_model.108583_t, internal, 3457, 3468
-recovered GeneMark_model.108583_t, internal, 3490, 3618
-recovered GeneMark_model.108583_t, internal, 3660, 3725
-recovered GeneMark_model.108583_t, internal, 3748, 3777
-recovered GeneMark_model.108583_t, internal, 3806, 3817
-recovered GeneMark_model.108583_t, internal, 3841, 3888

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108582_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4000
-exon list size: 60


building trellis

1.6    
3.2    
4.8    
6.5    
8.1    
9.7    
11.3    
12.9    
14.5    
16.1    
17.7    
19.4    
21.0    
22.6    
24.2    
25.8    
27.4    
29.0    
30.6    
32.3    
33.9    
35.5    
37.1    
38.7    
40.3    
41.9    
43.5    
45.2    
46.8    
48.4    
50.0    
51.6    
53.2    
54.8    
56.5    
58.1    
59.7    
61.3    
62.9    
64.5    
66.1    
67.7    
69.4    
71.0    
72.6    
74.2    
75.8    
77.4    
79.0    
80.6    
82.3    
83.9    
85.5    
87.1    
88.7    
90.3    
91.9    
93.5    
95.2    
96.8    
98.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support