-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_903

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3932, 3939
Sorry, prediction GeneMark_model.108580_t fails validation.
(ATG)	 TG	3431-3463	GT	TGG
(GTA)	 AG	3563-3570	GT	CTG
(AGA)	 AG	3676-3681	GT	AGG
(AAA)	 AG	3708-3725	GT	AGG
(AGA)	 AG	3750-3761	GT	AGG
(AGA)	 AG	3786-3797	GT	AGG
(ACA)	 AG	3818-3823	GT	AGG
(AGA)	 AG	3850-3855	GT	AGG
(ATG)	 AG	3876-3908	GT	GAG
(TGA)	 AG	3932-3939	GT	AGG
-recovered GeneMark_model.108580_t, initial, 3431, 3463
-recovered GeneMark_model.108580_t, initial, 3876, 3908
-recovered GeneMark_model.108580_t, internal, 3563, 3570
-recovered GeneMark_model.108580_t, internal, 3676, 3681
-recovered GeneMark_model.108580_t, internal, 3708, 3725
-recovered GeneMark_model.108580_t, internal, 3750, 3761
-recovered GeneMark_model.108580_t, internal, 3786, 3797
-recovered GeneMark_model.108580_t, internal, 3818, 3823
-recovered GeneMark_model.108580_t, internal, 3850, 3855
-recovered GeneMark_model.108580_t, internal, 3876, 3908
-recovered GeneMark_model.108580_t, internal, 3932, 3939

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2004, 2199
Sorry, prediction snap_scaffold_903-snap.1-T1 fails validation.
(TGT)	 AG	2004-2199	GT	GGG
(ATC)	 AG	2301-2428	AG	AGA
-recovered snap_scaffold_903-snap.1-T1, terminal, 2301, 2428
-recovered snap_scaffold_903-snap.1-T1, internal, 2004, 2199
Couldn't classify 3575, 3607
Sorry, prediction GeneMark_model.108579_t fails validation.
(ATG)	 AT	1937-1962	GT	GAG
(TGT)	 AG	2004-2108	GT	AAG
(AAG)	 AG	2195-2214	GT	GCG
(ATC)	 AG	2301-2424	GT	GGG
(GGA)	 AG	2447-2530	GC	GGG
(AGA)	 AG	3389-3467	GT	GTG
(AGA)	 AG	3493-3503	GT	GAG
(ACA)	 AG	3523-3537	GT	GAG
(TGT)	 AG	3575-3607	GT	GAG
-recovered GeneMark_model.108579_t, initial, 1937, 1962
-recovered GeneMark_model.108579_t, internal, 2004, 2108
-recovered GeneMark_model.108579_t, internal, 2195, 2214
-recovered GeneMark_model.108579_t, internal, 2301, 2424
-recovered GeneMark_model.108579_t, internal, 2447, 2530
-recovered GeneMark_model.108579_t, internal, 3389, 3467
-recovered GeneMark_model.108579_t, internal, 3493, 3503
-recovered GeneMark_model.108579_t, internal, 3523, 3537
-recovered GeneMark_model.108579_t, internal, 3575, 3607

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4001
-exon list size: 48


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support