-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_902

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 453, 624
Sorry, prediction Augustus_model.g41431.t1 fails validation.
(ACG)	 AG	453-624	GT	CAG
(AAC)	 AG	899-998	GT	AGG
-recovered Augustus_model.g41431.t1, terminal, 899, 998
-recovered Augustus_model.g41431.t1, internal, 453, 624
-recovered Augustus_model.g41431.t1, internal, 899, 998
Valid prediction for GlimmerHMM_glimmerT_62327-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62327-T1 453-628-terminal-1 is invalid.
Couldn't classify 40, 171
Sorry, prediction GeneMark_model.108577_t fails validation.
(AGG)	 AG	40-171	GT	GAG
(GGG)	 AG	193-231	GT	AAG
(AAG)	 AG	256-263	GT	AGG
(CTG)	 AG	516-579	GT	ACG
(AAC)	 AG	899-998	GT	AGG
-recovered GeneMark_model.108577_t, terminal, 899, 998
-recovered GeneMark_model.108577_t, internal, 40, 171
-recovered GeneMark_model.108577_t, internal, 193, 231
-recovered GeneMark_model.108577_t, internal, 256, 263
-recovered GeneMark_model.108577_t, internal, 516, 579
-recovered GeneMark_model.108577_t, internal, 899, 998

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 231, 319
Sorry, prediction snap_scaffold_902-snap.1-T1 fails validation.
(ATC)	 AG	231-319	GT	ATG
(CGT)	 AG	3398-3542	GT	AGG
-recovered snap_scaffold_902-snap.1-T1, terminal, 3398, 3542
-recovered snap_scaffold_902-snap.1-T1, internal, 231, 319
-recovered snap_scaffold_902-snap.1-T1, internal, 3398, 3542
Couldn't classify 280, 319
Sorry, prediction GeneMark_model.108578_t fails validation.
(GAG)	 AG	280-319	GT	ATG
(CTA)	 AG	2407-2438	GT	AAG
(GAA)	 AG	2488-2625	GT	AGG
(GAA)	 AG	2646-2670	AG	AGA
-recovered GeneMark_model.108578_t, terminal, 2407, 2438
-recovered GeneMark_model.108578_t, terminal, 2646, 2670
-recovered GeneMark_model.108578_t, internal, 280, 319
-recovered GeneMark_model.108578_t, internal, 2407, 2438
-recovered GeneMark_model.108578_t, internal, 2488, 2625

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4002
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support