-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_901

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 609, 641
Sorry, prediction GeneMark_model.108576_t fails validation.
(ACT)	 AG	609-641	GT	AGG
(GGC)	 AG	1300-1452	GT	TGG
(GGG)	 AG	1488-1508	GT	GGG
(TGC)	 AG	2250-2264	GT	CGG
(AGC)	 AG	2307-2447	GT	GGG
(GGG)	 AG	2470-2517	GT	GGG
(AGG)	 AG	2544-2690	GT	GTG
(AGA)	 AG	3038-3067	GT	GAG
(AGA)	 AG	3228-3246	GT	GAG
-recovered GeneMark_model.108576_t, terminal, 3228, 3246
-recovered GeneMark_model.108576_t, internal, 609, 641
-recovered GeneMark_model.108576_t, internal, 1300, 1452
-recovered GeneMark_model.108576_t, internal, 1488, 1508
-recovered GeneMark_model.108576_t, internal, 2250, 2264
-recovered GeneMark_model.108576_t, internal, 2307, 2447
-recovered GeneMark_model.108576_t, internal, 2470, 2517
-recovered GeneMark_model.108576_t, internal, 2544, 2690
-recovered GeneMark_model.108576_t, internal, 3038, 3067
-recovered GeneMark_model.108576_t, internal, 3228, 3246
Valid prediction for GlimmerHMM_glimmerT_62326-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3910, 3927
Sorry, prediction Augustus_model.g41430.t1 fails validation.
(ATG)	 CG	3432-3586	GT	GGG
(TTC)	 AG	3910-3927	GT	ATG
-recovered Augustus_model.g41430.t1, initial, 3432, 3586
-recovered Augustus_model.g41430.t1, internal, 3910, 3927
Couldn't classify 1786, 1881
Couldn't classify 3543, 3586
Sorry, prediction snap_scaffold_901-snap.1-T1 fails validation.
(CGG)	 AG	1786-1881	GT	GAG
(GAG)	 AG	2729-2821	GT	GAG
(ACT)	 AG	3543-3586	GT	GGG
-recovered snap_scaffold_901-snap.1-T1, internal, 1786, 1881
-recovered snap_scaffold_901-snap.1-T1, internal, 2729, 2821
-recovered snap_scaffold_901-snap.1-T1, internal, 3543, 3586

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4003
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support