-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_90

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_90-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61257-T1
Couldn't classify 199, 210
Sorry, prediction GeneMark_model.106503_t fails validation.
(TGT)	 AG	199-210	GT	GGG
(ACG)	 AG	349-380	GT	GGG
(AAA)	 AG	2529-2621	GT	AGG
(GCT)	 AG	3721-3890	GG	AAG
-recovered GeneMark_model.106503_t, terminal, 3721, 3890
-recovered GeneMark_model.106503_t, internal, 199, 210
-recovered GeneMark_model.106503_t, internal, 349, 380
-recovered GeneMark_model.106503_t, internal, 2529, 2621
Valid prediction for Augustus_model.g40751.t1
Valid prediction for GlimmerHMM_glimmerT_61258-T1
Valid prediction for GlimmerHMM_glimmerT_61260-T1
Valid prediction for snap_scaffold_90-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61259-T1
Valid prediction for snap_scaffold_90-snap.3-T1
Valid prediction for Augustus_model.g40752.t1
Valid prediction for GeneMark_model.106504_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10089, rend_intergenic: 7343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 17766
-exon list size: 55


building trellis

1.8    
3.5    
5.3    
7.0    
8.8    
10.5    
12.3    
14.0    
15.8    
17.5    
19.3    
21.1    
22.8    
24.6    
26.3    
28.1    
29.8    
31.6    
33.3    
35.1    
36.8    
38.6    
40.4    
42.1    
43.9    
45.6    
47.4    
49.1    
50.9    
52.6    
54.4    
56.1    
57.9    
59.6    
61.4    
63.2    
64.9    
66.7    
68.4    
70.2    
71.9    
73.7    
75.4    
77.2    
78.9    
80.7    
82.5    
84.2    
86.0    
87.7    
89.5    
91.2    
93.0    
94.7    
96.5    
98.2    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 10089, rend_intergenic: 7343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support