-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_8847755-9015103

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.39595_t
Valid prediction for GlimmerHMM_glimmerT_23101-T1
Valid prediction for GeneMark_model.39565_t
Valid prediction for GlimmerHMM_glimmerT_23108-T1
Valid prediction for GeneMark_model.39586_t
Valid prediction for GeneMark_model.39568_t
Valid prediction for GeneMark_model.39572_t
Valid prediction for GeneMark_model.39583_t
Valid prediction for Augustus_model.g15484.t1
Valid prediction for snap_scaffold_9-snap.1828-T1
Valid prediction for Augustus_model.g15485.t1
Valid prediction for GeneMark_model.39590_t
Valid prediction for snap_scaffold_9-snap.1814-T1
Valid prediction for GlimmerHMM_glimmerT_23104-T1
Valid prediction for GlimmerHMM_glimmerT_23115-T1
Valid prediction for GeneMark_model.39591_t
Valid prediction for snap_scaffold_9-snap.1798-T1
Valid prediction for GlimmerHMM_glimmerT_23100-T1
Couldn't classify 117191, 117321
Couldn't classify 118642, 118903
Sorry, prediction pasa_asmbl_54177.p2 fails validation.
(CAG)	 AG	117191-117321	GT	AGG
(TCG)	 AG	118642-118903	AC	CCA
-recovered pasa_asmbl_54177.p2, internal, 117191, 117321
Valid prediction for snap_scaffold_9-snap.1822-T1
Valid prediction for GlimmerHMM_glimmerT_23117-T1
Valid prediction for GlimmerHMM_glimmerT_23121-T1
Valid prediction for Augustus_model.g15477.t1
Valid prediction for GeneMark_model.39576_t
Valid prediction for Augustus_model.g15469.t1
Couldn't classify 119036, 119396
Sorry, prediction pasa_asmbl_54178.p1 fails validation.
(CCC)	 CC	119036-119396	GT	AGG
(ACA)	 AG	119529-119683	GT	ACG
(GAT)	 AG	119959-120088	GT	AGG
(TGT)	 AG	120245-120366	CA	AGC
-recovered pasa_asmbl_54178.p1, terminal, 120245, 120366
-recovered pasa_asmbl_54178.p1, internal, 119529, 119683
-recovered pasa_asmbl_54178.p1, internal, 119959, 120088
Valid prediction for snap_scaffold_9-snap.1809-T1
Valid prediction for GeneMark_model.39599_t
Valid prediction for GlimmerHMM_glimmerT_23116-T1
Valid prediction for GeneMark_model.39567_t
Valid prediction for Augustus_model.g15487.t1
Valid prediction for GeneMark_model.39598_t
Valid prediction for snap_scaffold_9-snap.1804-T1
Valid prediction for snap_scaffold_9-snap.1806-T1
Valid prediction for snap_scaffold_9-snap.1812-T1
Couldn't classify 77887, 78076
Sorry, prediction pasa_asmbl_54168.p1 fails validation.
(ATG)	 CC	76867-76948	GT	AGG
(AGA)	 AG	77412-77523	GT	TGG
(TCA)	 AG	77887-78076	GA	AGG
-recovered pasa_asmbl_54168.p1, initial, 76867, 76948
-recovered pasa_asmbl_54168.p1, internal, 77412, 77523
Valid prediction for GeneMark_model.39571_t
Valid prediction for GlimmerHMM_glimmerT_23118-T1
Valid prediction for Augustus_model.g15483.t1
Valid prediction for Augustus_model.g15482.t1
Couldn't classify 107513, 107629
Couldn't classify 109986, 110129
Sorry, prediction pasa_asmbl_54172.p1 fails validation.
(GTG)	 AG	107513-107629	GT	AGG
(GTC)	 AG	107794-107857	GT	CGG
(ACC)	 AG	108049-108210	GT	AGG
(ACT)	 AG	108570-108694	GT	GGG
(AGT)	 AG	108799-108922	GT	GGG
(ATT)	 AG	109012-109130	GT	GGG
(TTG)	 AG	109362-109472	GT	AGG
(TCA)	 AG	109986-110129	CA	TCC
-recovered pasa_asmbl_54172.p1, internal, 107513, 107629
-recovered pasa_asmbl_54172.p1, internal, 107794, 107857
-recovered pasa_asmbl_54172.p1, internal, 108049, 108210
-recovered pasa_asmbl_54172.p1, internal, 108570, 108694
-recovered pasa_asmbl_54172.p1, internal, 108799, 108922
-recovered pasa_asmbl_54172.p1, internal, 109012, 109130
-recovered pasa_asmbl_54172.p1, internal, 109362, 109472
Valid prediction for HiQ_model.g15480.t1
Valid prediction for Augustus_model.g15488.t1
Valid prediction for snap_scaffold_9-snap.1825-T1
Valid prediction for snap_scaffold_9-snap.1818-T1
Valid prediction for GeneMark_model.39588_t
Valid prediction for snap_scaffold_9-snap.1829-T1
Valid prediction for snap_scaffold_9-snap.1820-T1
Valid prediction for Augustus_model.g15474.t1
Valid prediction for snap_scaffold_9-snap.1816-T1
Valid prediction for snap_scaffold_9-snap.1823-T1
Valid prediction for snap_scaffold_9-snap.1800-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.1832-T1
Valid prediction for GeneMark_model.39574_t
Valid prediction for snap_scaffold_9-snap.1802-T1
Valid prediction for GeneMark_model.39581_t
Valid prediction for GeneMark_model.39578_t
Valid prediction for GlimmerHMM_glimmerT_23097-T1
Valid prediction for snap_scaffold_9-snap.1811-T1
Valid prediction for snap_scaffold_9-snap.1807-T1
Valid prediction for Augustus_model.g15475.t1
Valid prediction for GeneMark_model.39601_t
Valid prediction for Augustus_model.g15470.t1
Couldn't classify 142905, 143078
Sorry, prediction pasa_asmbl_54182.p1 fails validation.
(GGG)	 CA	142905-143078	GT	CTG
(GTG)	 AG	143672-143882	GT	AGG
(CTT)	 AG	144097-144263	GA	AAG
-recovered pasa_asmbl_54182.p1, terminal, 144097, 144263
-recovered pasa_asmbl_54182.p1, internal, 143672, 143882
Valid prediction for snap_scaffold_9-snap.1803-T1
Valid prediction for GlimmerHMM_glimmerT_23102-T1
Couldn't classify 112552, 112604
Couldn't classify 117015, 117133
Sorry, prediction pasa_asmbl_54173.p1 fails validation.
(CCG)	 CT	112552-112604	GT	AGG
(GTC)	 AG	115430-115571	GT	AGG
(GAG)	 AG	116060-116179	GT	AGG
(GCC)	 AG	116395-116453	GT	AGG
(GTT)	 AG	116688-116797	GT	CGG
(GTG)	 AG	117015-117133	CA	AGC
-recovered pasa_asmbl_54173.p1, internal, 115430, 115571
-recovered pasa_asmbl_54173.p1, internal, 116060, 116179
-recovered pasa_asmbl_54173.p1, internal, 116395, 116453
-recovered pasa_asmbl_54173.p1, internal, 116688, 116797
Valid prediction for GeneMark_model.39592_t
Valid prediction for Augustus_model.g15489.t1
Valid prediction for GlimmerHMM_glimmerT_23112-T1
Couldn't classify 79397, 79522
Sorry, prediction pasa_asmbl_54169.p1 fails validation.
(CTT)	 CC	79397-79522	GT	GAG
(GGA)	 AG	79740-79847	GT	AGG
(AGT)	 AG	80016-80093	GT	AGG
(GAC)	 AG	80184-80288	GT	AGG
(GAC)	 AG	81223-81878	GT	AGG
(GTG)	 AG	81978-83232	GT	AGG
(TCC)	 AG	83923-83976	GT	AGG
(ACT)	 AG	84083-84157	GT	AAG
(GAA)	 AG	84322-84398	GT	AAG
(GCG)	 AG	84546-84914	GT	AGG
(GGC)	 AG	85058-85189	GT	AGG
(AGA)	 AG	85294-85489	GT	AGG
(GCC)	 AG	85656-85730	GT	AGG
(TTG)	 AG	85835-85957	GT	AGG
(GAG)	 AG	86070-86213	GT	AGG
(GAG)	 AG	86319-86402	GT	GGG
(GCA)	 AG	86525-86593	GT	AGG
(GGT)	 AG	86680-87014	GT	AGG
(TGA)	 AG	87258-87443	GT	GAG
(CCT)	 AG	87596-87761	GT	AGG
(GAG)	 AG	88050-88157	GT	AGG
(CCT)	 AG	88384-88483	GT	CGG
(GCA)	 AG	88700-89041	GT	TGG
(GGG)	 AG	89198-89270	GT	AGG
(TGA)	 AG	89367-89486	GT	GTG
(GCC)	 AG	89592-89688	GG	GAG
-recovered pasa_asmbl_54169.p1, terminal, 89592, 89688
-recovered pasa_asmbl_54169.p1, internal, 79740, 79847
-recovered pasa_asmbl_54169.p1, internal, 80016, 80093
-recovered pasa_asmbl_54169.p1, internal, 80184, 80288
-recovered pasa_asmbl_54169.p1, internal, 81223, 81878
-recovered pasa_asmbl_54169.p1, internal, 81978, 83232
-recovered pasa_asmbl_54169.p1, internal, 83923, 83976
-recovered pasa_asmbl_54169.p1, internal, 84083, 84157
-recovered pasa_asmbl_54169.p1, internal, 84322, 84398
-recovered pasa_asmbl_54169.p1, internal, 84546, 84914
-recovered pasa_asmbl_54169.p1, internal, 85058, 85189
-recovered pasa_asmbl_54169.p1, internal, 85294, 85489
-recovered pasa_asmbl_54169.p1, internal, 85656, 85730
-recovered pasa_asmbl_54169.p1, internal, 85835, 85957
-recovered pasa_asmbl_54169.p1, internal, 86070, 86213
-recovered pasa_asmbl_54169.p1, internal, 86319, 86402
-recovered pasa_asmbl_54169.p1, internal, 86525, 86593
-recovered pasa_asmbl_54169.p1, internal, 86680, 87014
-recovered pasa_asmbl_54169.p1, internal, 87258, 87443
-recovered pasa_asmbl_54169.p1, internal, 87596, 87761
-recovered pasa_asmbl_54169.p1, internal, 88050, 88157
-recovered pasa_asmbl_54169.p1, internal, 88384, 88483
-recovered pasa_asmbl_54169.p1, internal, 88700, 89041
-recovered pasa_asmbl_54169.p1, internal, 89198, 89270
-recovered pasa_asmbl_54169.p1, internal, 89367, 89486
Valid prediction for GeneMark_model.39564_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.39570_t
Valid prediction for GlimmerHMM_glimmerT_23110-T1
Valid prediction for pasa_asmbl_55113.p1
Valid prediction for Augustus_model.g15478.t1
Valid prediction for GeneMark_model.39587_t
Valid prediction for Augustus_model.g15476.t1
Valid prediction for snap_scaffold_9-snap.1801-T1
Valid prediction for Augustus_model.g15486.t1
Valid prediction for Augustus_model.g15472.t1
Valid prediction for snap_scaffold_9-snap.1810-T1
Couldn't classify 158477, 158671
Sorry, prediction pasa_asmbl_55111.p1 fails validation.
(CAC)	 TC	158477-158671	GT	ACG
(GGT)	 AG	158796-158875	GT	AGG
(ATG)	 AG	160036-160310	GT	AGG
(TGG)	 AG	160619-160779	AA	GAA
add_exon() Sorry, pasa_asmbl_55111.p1 160036-160310-initial-1 is invalid.
-recovered pasa_asmbl_55111.p1, initial, 160036, 160310
-recovered pasa_asmbl_55111.p1, terminal, 160619, 160779
-recovered pasa_asmbl_55111.p1, internal, 158796, 158875
-recovered pasa_asmbl_55111.p1, internal, 160036, 160310
Valid prediction for GlimmerHMM_glimmerT_23103-T1
Valid prediction for GeneMark_model.39600_t
Valid prediction for GeneMark_model.39577_t
Valid prediction for snap_scaffold_9-snap.1830-T1
Valid prediction for GlimmerHMM_glimmerT_23099-T1
Valid prediction for snap_scaffold_9-snap.1827-T1
Valid prediction for GeneMark_model.39582_t
Valid prediction for GeneMark_model.39594_t
Valid prediction for GlimmerHMM_glimmerT_23107-T1
Valid prediction for GeneMark_model.39596_t
Valid prediction for GeneMark_model.39569_t
Valid prediction for Augustus_model.g15473.t1
Valid prediction for snap_scaffold_9-snap.1824-T1
Valid prediction for snap_scaffold_9-snap.1831-T1
Valid prediction for GeneMark_model.39585_t
Valid prediction for GlimmerHMM_glimmerT_23111-T1
Valid prediction for snap_scaffold_9-snap.1817-T1
Couldn't classify 66737, 66748
Sorry, prediction pasa_asmbl_55119.p1 fails validation.
(ACC)	 TC	66737-66748	GT	AGG
(ACT)	 AG	66873-66994	GT	CTG
(GTA)	 AG	68295-68459	GT	CAG
(GAC)	 AG	68724-68769	GT	AGG
(TAC)	 AG	69165-69266	GT	AGG
(TGC)	 AG	69525-69608	GT	AGG
(AGG)	 AG	69781-69946	GT	GTG
(TGG)	 AG	70149-70242	GT	AGG
(AAT)	 AG	70369-70546	TG	AAT
-recovered pasa_asmbl_55119.p1, terminal, 70369, 70546
-recovered pasa_asmbl_55119.p1, internal, 66873, 66994
-recovered pasa_asmbl_55119.p1, internal, 68295, 68459
-recovered pasa_asmbl_55119.p1, internal, 68724, 68769
-recovered pasa_asmbl_55119.p1, internal, 69165, 69266
-recovered pasa_asmbl_55119.p1, internal, 69525, 69608
-recovered pasa_asmbl_55119.p1, internal, 69781, 69946
-recovered pasa_asmbl_55119.p1, internal, 70149, 70242
Valid prediction for GeneMark_model.39575_t
Valid prediction for snap_scaffold_9-snap.1821-T1
Valid prediction for GeneMark_model.39580_t
Valid prediction for GlimmerHMM_glimmerT_23098-T1
Valid prediction for snap_scaffold_9-snap.1799-T1
Valid prediction for Augustus_model.g15479.t1
Valid prediction for snap_scaffold_9-snap.1819-T1
Valid prediction for CodingQuarry_transcript_62092-T1
Valid prediction for pasa_asmbl_55116.p1
Valid prediction for GeneMark_model.39566_t
Valid prediction for snap_scaffold_9-snap.1826-T1
Valid prediction for Augustus_model.g15471.t1
Valid prediction for CodingQuarry_transcript_62093-T1
Valid prediction for GlimmerHMM_glimmerT_23114-T1
Valid prediction for GeneMark_model.39573_t
Valid prediction for GeneMark_model.39589_t
Valid prediction for snap_scaffold_9-snap.1815-T1
Valid prediction for GeneMark_model.39597_t
Valid prediction for GlimmerHMM_glimmerT_23106-T1
Valid prediction for GlimmerHMM_glimmerT_23113-T1
Valid prediction for GlimmerHMM_glimmerT_23109-T1
Valid prediction for snap_scaffold_9-snap.1813-T1
Valid prediction for GlimmerHMM_glimmerT_23119-T1
Valid prediction for GlimmerHMM_glimmerT_23120-T1
Valid prediction for snap_scaffold_9-snap.1808-T1
Valid prediction for GeneMark_model.39593_t
Valid prediction for GeneMark_model.39584_t
Valid prediction for GlimmerHMM_glimmerT_23105-T1
Valid prediction for snap_scaffold_9-snap.1805-T1
Valid prediction for GeneMark_model.39579_t
Valid prediction for HiQ_model.g15481.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9032, rend_intergenic: 6571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25975, rend_intergenic: 9119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41670, rend_intergenic: 37500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47004, rend_intergenic: 44264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52592, rend_intergenic: 48310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55599, rend_intergenic: 53202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65404, rend_intergenic: 60878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89688, rend_intergenic: 81081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95231, rend_intergenic: 90902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110182, rend_intergenic: 104787  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121112, rend_intergenic: 114778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127005, rend_intergenic: 125917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 167349
-exon list size: 680


building trellis

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53.1    
53.2    
53.4    
53.5    
53.7    
53.8    
54.0    
54.1    
54.3    
54.4    
54.5    
54.7    
54.8    
55.0    
55.1    
55.3    
55.4    
55.6    
55.7    
55.9    
56.0    
56.2    
56.3    
56.5    
56.6    
56.7    
56.9    
57.0    
57.2    
57.3    
57.5    
57.6    
57.8    
57.9    
58.1    
58.2    
58.4    
58.5    
58.7    
58.8    
58.9    
59.1    
59.2    
59.4    
59.5    
59.7    
59.8    
60.0    
60.1    
60.3    
60.4    
60.6    
60.7    
60.9    
61.0    
61.1    
61.3    
61.4    
61.6    
61.7    
61.9    
62.0    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.0    
63.2    
63.3    
63.5    
63.6    
63.8    
63.9    
64.1    
64.2    
64.4    
64.5    
64.7    
64.8    
65.0    
65.1    
65.2    
65.4    
65.5    
65.7    
65.8    
66.0    
66.1    
66.3    
66.4    
66.6    
66.7    
66.9    
67.0    
67.2    
67.3    
67.4    
67.6    
67.7    
67.9    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.5    
69.6    
69.8    
69.9    
70.1    
70.2    
70.4    
70.5    
70.7    
70.8    
71.0    
71.1    
71.3    
71.4    
71.6    
71.7    
71.8    
72.0    
72.1    
72.3    
72.4    
72.6    
72.7    
72.9    
73.0    
73.2    
73.3    
73.5    
73.6    
73.8    
73.9    
74.0    
74.2    
74.3    
74.5    
74.6    
74.8    
74.9    
75.1    
75.2    
75.4    
75.5    
75.7    
75.8    
76.0    
76.1    
76.2    
76.4    
76.5    
76.7    
76.8    
77.0    
77.1    
77.3    
77.4    
77.6    
77.7    
77.9    
78.0    
78.2    
78.3    
78.4    
78.6    
78.7    
78.9    
79.0    
79.2    
79.3    
79.5    
79.6    
79.8    
79.9    
80.1    
80.2    
80.4    
80.5    
80.6    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.1    
82.3    
82.4    
82.6    
82.7    
82.8    
83.0    
83.1    
83.3    
83.4    
83.6    
83.7    
83.9    
84.0    
84.2    
84.3    
84.5    
84.6    
84.8    
84.9    
85.0    
85.2    
85.3    
85.5    
85.6    
85.8    
85.9    
86.1    
86.2    
86.4    
86.5    
86.7    
86.8    
87.0    
87.1    
87.2    
87.4    
87.5    
87.7    
87.8    
88.0    
88.1    
88.3    
88.4    
88.6    
88.7    
88.9    
89.0    
89.1    
89.3    
89.4    
89.6    
89.7    
89.9    
90.0    
90.2    
90.3    
90.5    
90.6    
90.8    
90.9    
91.1    
91.2    
91.3    
91.5    
91.6    
91.8    
91.9    
92.1    
92.2    
92.4    
92.5    
92.7    
92.8    
93.0    
93.1    
93.3    
93.4    
93.5    
93.7    
93.8    
94.0    
94.1    
94.3    
94.4    
94.6    
94.7    
94.9    
95.0    
95.2    
95.3    
95.5    
95.6    
95.7    
95.9    
96.0    
96.2    
96.3    
96.5    
96.6    
96.8    
96.9    
97.1    
97.2    
97.4    
97.5    
97.7    
97.8    
97.9    
98.1    
98.2    
98.4    
98.5    
98.7    
98.8    
99.0    
99.1    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 9032, rend_intergenic: 6571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25975, rend_intergenic: 9119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41670, rend_intergenic: 37500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47004, rend_intergenic: 44264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52592, rend_intergenic: 48310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55599, rend_intergenic: 53202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65404, rend_intergenic: 60878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89688, rend_intergenic: 81081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95231, rend_intergenic: 90902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110182, rend_intergenic: 104787  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121112, rend_intergenic: 114778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127005, rend_intergenic: 125917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support