-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_7103153-7320557

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_22904-T1
Valid prediction for GlimmerHMM_glimmerT_22905-T1
Valid prediction for snap_scaffold_9-snap.1521-T1
Valid prediction for Augustus_model.g15323.t1
Valid prediction for GeneMark_model.39280_t
Valid prediction for snap_scaffold_9-snap.1484-T1
Valid prediction for GeneMark_model.39321_t
Valid prediction for GlimmerHMM_glimmerT_22915-T1
Valid prediction for GeneMark_model.39284_t
Valid prediction for GeneMark_model.39306_t
Valid prediction for GeneMark_model.39309_t
Valid prediction for GeneMark_model.39272_t
Valid prediction for GlimmerHMM_glimmerT_22909-T1
Valid prediction for GeneMark_model.39286_t
Valid prediction for Augustus_model.g15320.t1
Valid prediction for snap_scaffold_9-snap.1502-T1
Valid prediction for GlimmerHMM_glimmerT_22890-T1
Valid prediction for GeneMark_model.39298_t
Valid prediction for snap_scaffold_9-snap.1490-T1
Valid prediction for GlimmerHMM_glimmerT_22910-T1
Valid prediction for snap_scaffold_9-snap.1511-T1
Valid prediction for snap_scaffold_9-snap.1514-T1
Valid prediction for snap_scaffold_9-snap.1500-T1
Valid prediction for Augustus_model.g15321.t1
Valid prediction for Augustus_model.g15337.t1
Valid prediction for GeneMark_model.39276_t
Valid prediction for GeneMark_model.39296_t
Valid prediction for GeneMark_model.39307_t
Valid prediction for Augustus_model.g15326.t1
Valid prediction for snap_scaffold_9-snap.1507-T1
Valid prediction for GeneMark_model.39282_t
Valid prediction for GeneMark_model.39314_t
Valid prediction for GlimmerHMM_glimmerT_22908-T1
Valid prediction for GeneMark_model.39269_t
Valid prediction for snap_scaffold_9-snap.1512-T1
Valid prediction for Augustus_model.g15339.t1
Valid prediction for Augustus_model.g15325.t1
Valid prediction for snap_scaffold_9-snap.1503-T1
Valid prediction for GeneMark_model.39316_t
Valid prediction for snap_scaffold_9-snap.1498-T1
Valid prediction for GeneMark_model.39319_t
Valid prediction for snap_scaffold_9-snap.1494-T1
Valid prediction for snap_scaffold_9-snap.1530-T1
Valid prediction for GeneMark_model.39278_t
Valid prediction for Augustus_model.g15334.t1
Valid prediction for GeneMark_model.39290_t
Valid prediction for GeneMark_model.39317_t
Valid prediction for snap_scaffold_9-snap.1524-T1
Valid prediction for snap_scaffold_9-snap.1531-T1
Valid prediction for GlimmerHMM_glimmerT_22920-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g15335.t1
Valid prediction for GeneMark_model.39325_t
Valid prediction for GeneMark_model.39288_t
Valid prediction for GeneMark_model.39305_t
Valid prediction for GlimmerHMM_glimmerT_22906-T1
Valid prediction for GeneMark_model.39312_t
Valid prediction for Augustus_model.g15336.t1
Valid prediction for GeneMark_model.39265_t
Valid prediction for snap_scaffold_9-snap.1487-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for Augustus_model.g15315.t1
Valid prediction for GlimmerHMM_glimmerT_22902-T1
Valid prediction for GlimmerHMM_glimmerT_22919-T1
Valid prediction for snap_scaffold_9-snap.1522-T1
Valid prediction for GlimmerHMM_glimmerT_22921-T1
Valid prediction for snap_scaffold_9-snap.1506-T1
Valid prediction for snap_scaffold_9-snap.1529-T1
Valid prediction for GlimmerHMM_glimmerT_22893-T1
Valid prediction for Augustus_model.g15338.t1
Valid prediction for snap_scaffold_9-snap.1510-T1
Valid prediction for GeneMark_model.39293_t
Valid prediction for GeneMark_model.39271_t
Valid prediction for GeneMark_model.39322_t
Valid prediction for GlimmerHMM_glimmerT_22899-T1
Valid prediction for GlimmerHMM_glimmerT_22896-T1
Valid prediction for GeneMark_model.39327_t
Valid prediction for snap_scaffold_9-snap.1482-T1
Valid prediction for GeneMark_model.39302_t
Valid prediction for snap_scaffold_9-snap.1495-T1
Valid prediction for snap_scaffold_9-snap.1493-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g15331.t1
Valid prediction for snap_scaffold_9-snap.1496-T1
Valid prediction for GeneMark_model.39301_t
Valid prediction for Augustus_model.g15333.t1
Valid prediction for GlimmerHMM_glimmerT_22918-T1
Valid prediction for snap_scaffold_9-snap.1481-T1
Valid prediction for snap_scaffold_9-snap.1492-T1
Valid prediction for snap_scaffold_9-snap.1523-T1
Valid prediction for GlimmerHMM_glimmerT_22900-T1
Valid prediction for Augustus_model.g15322.t1
Valid prediction for GeneMark_model.39300_t
Valid prediction for snap_scaffold_9-snap.1528-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.39320_t
Valid prediction for snap_scaffold_9-snap.1488-T1
Valid prediction for snap_scaffold_9-snap.1477-T1
Valid prediction for GeneMark_model.39285_t
Valid prediction for GeneMark_model.39318_t
Valid prediction for GlimmerHMM_glimmerT_22907-T1
Valid prediction for snap_scaffold_9-snap.1520-T1
Valid prediction for GeneMark_model.39328_t
Valid prediction for GeneMark_model.39268_t
Valid prediction for GeneMark_model.39313_t
Valid prediction for snap_scaffold_9-snap.1478-T1
Valid prediction for snap_scaffold_9-snap.1532-T1
Valid prediction for GlimmerHMM_glimmerT_22888-T1
Valid prediction for GeneMark_model.39267_t
Valid prediction for GeneMark_model.39294_t
Valid prediction for GlimmerHMM_glimmerT_22911-T1
Valid prediction for GeneMark_model.39292_t
Valid prediction for GlimmerHMM_glimmerT_22913-T1
Valid prediction for snap_scaffold_9-snap.1476-T1
Valid prediction for snap_scaffold_9-snap.1499-T1
Valid prediction for snap_scaffold_9-snap.1483-T1
Valid prediction for snap_scaffold_9-snap.1501-T1
Valid prediction for snap_scaffold_9-snap.1486-T1
Valid prediction for snap_scaffold_9-snap.1504-T1
Valid prediction for snap_scaffold_9-snap.1515-T1
Valid prediction for GeneMark_model.39289_t
Valid prediction for snap_scaffold_9-snap.1526-T1
Valid prediction for snap_scaffold_9-snap.1497-T1
Valid prediction for GeneMark_model.39315_t
Valid prediction for snap_scaffold_9-snap.1513-T1
Valid prediction for GeneMark_model.39266_t
Valid prediction for snap_scaffold_9-snap.1509-T1
Valid prediction for GlimmerHMM_glimmerT_22889-T1
Valid prediction for snap_scaffold_9-snap.1489-T1
Valid prediction for Augustus_model.g15330.t1
Valid prediction for snap_scaffold_9-snap.1519-T1
Valid prediction for snap_scaffold_9-snap.1505-T1
Valid prediction for GlimmerHMM_glimmerT_22898-T1
Valid prediction for GeneMark_model.39324_t
Valid prediction for snap_scaffold_9-snap.1479-T1
Valid prediction for Augustus_model.g15316.t1
Valid prediction for snap_scaffold_9-snap.1517-T1
Valid prediction for GeneMark_model.39287_t
Valid prediction for GlimmerHMM_glimmerT_22922-T1
Valid prediction for GlimmerHMM_glimmerT_22897-T1
Valid prediction for GeneMark_model.39263_t
Valid prediction for GeneMark_model.39311_t
Valid prediction for Augustus_model.g15324.t1
Valid prediction for GeneMark_model.39291_t
Valid prediction for GeneMark_model.39304_t
Valid prediction for GlimmerHMM_glimmerT_22892-T1
Valid prediction for Augustus_model.g15313.t1
Valid prediction for GlimmerHMM_glimmerT_22917-T1
Valid prediction for GlimmerHMM_glimmerT_22916-T1
Valid prediction for GeneMark_model.39270_t
Valid prediction for Augustus_model.g15318.t1
Valid prediction for GeneMark_model.39273_t
Valid prediction for snap_scaffold_9-snap.1525-T1
Valid prediction for GeneMark_model.39297_t
Valid prediction for GeneMark_model.39310_t
Valid prediction for GeneMark_model.39303_t
Valid prediction for GlimmerHMM_glimmerT_22903-T1
Valid prediction for GlimmerHMM_glimmerT_22912-T1
Valid prediction for GlimmerHMM_glimmerT_22891-T1
Valid prediction for GeneMark_model.39299_t
Valid prediction for Augustus_model.g15327.t1
Valid prediction for snap_scaffold_9-snap.1485-T1
Valid prediction for snap_scaffold_9-snap.1508-T1
Valid prediction for Augustus_model.g15319.t1
Valid prediction for Augustus_model.g15332.t1
Valid prediction for GeneMark_model.39274_t
Valid prediction for GlimmerHMM_glimmerT_22914-T1
Valid prediction for GeneMark_model.39279_t
Valid prediction for GeneMark_model.39275_t
Valid prediction for GeneMark_model.39326_t
Valid prediction for snap_scaffold_9-snap.1491-T1
Valid prediction for GlimmerHMM_glimmerT_22901-T1
Valid prediction for GeneMark_model.39308_t
Valid prediction for Augustus_model.g15328.t1
Valid prediction for snap_scaffold_9-snap.1518-T1
Valid prediction for GeneMark_model.39295_t
Valid prediction for Augustus_model.g15329.t1
Valid prediction for GlimmerHMM_glimmerT_22894-T1
Valid prediction for GeneMark_model.39277_t
Valid prediction for snap_scaffold_9-snap.1516-T1
Valid prediction for Augustus_model.g15317.t1
Valid prediction for snap_scaffold_9-snap.1480-T1
Valid prediction for GlimmerHMM_glimmerT_22895-T1
Valid prediction for GeneMark_model.39264_t
Valid prediction for GeneMark_model.39281_t
Valid prediction for snap_scaffold_9-snap.1527-T1
Valid prediction for GeneMark_model.39323_t
Valid prediction for Augustus_model.g15314.t1
Valid prediction for GeneMark_model.39283_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22830, rend_intergenic: 19217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30948, rend_intergenic: 27314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37897, rend_intergenic: 35722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46054, rend_intergenic: 43547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49037, rend_intergenic: 46463  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63491, rend_intergenic: 57465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67888, rend_intergenic: 64309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75307, rend_intergenic: 68226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84023, rend_intergenic: 79083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102642, rend_intergenic: 92022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110669, rend_intergenic: 105850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125740, rend_intergenic: 112285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131156, rend_intergenic: 125927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161586, rend_intergenic: 133465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162907, rend_intergenic: 161756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176933, rend_intergenic: 175622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181068, rend_intergenic: 177472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200030, rend_intergenic: 183821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201858, rend_intergenic: 200301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 217405
-exon list size: 1026


building trellis

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59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 48 predictions from path traversal
Error with prediction: snap lend_intergenic: 22830, rend_intergenic: 19217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30948, rend_intergenic: 27314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37897, rend_intergenic: 35722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46054, rend_intergenic: 43547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49037, rend_intergenic: 46463  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63491, rend_intergenic: 57465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67888, rend_intergenic: 64309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75307, rend_intergenic: 68226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84023, rend_intergenic: 79083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102642, rend_intergenic: 92022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110669, rend_intergenic: 105850  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125740, rend_intergenic: 112285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131156, rend_intergenic: 125927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161586, rend_intergenic: 133465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162907, rend_intergenic: 161756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176933, rend_intergenic: 175622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181068, rend_intergenic: 177472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200030, rend_intergenic: 183821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201858, rend_intergenic: 200301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support