-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_529347-677666

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.121-T1
Valid prediction for Augustus_model.g14720.t1
Valid prediction for pasa_asmbl_53744.p1
Valid prediction for HiQ_model.g14719.t1
Valid prediction for snap_scaffold_9-snap.137-T1
Valid prediction for HiQ_model.g14707.t1
Valid prediction for GeneMark_model.37376_t
Valid prediction for GlimmerHMM_glimmerT_21988-T1
Valid prediction for snap_scaffold_9-snap.157-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.37413_t
Valid prediction for GeneMark_model.37419_t
Valid prediction for GeneMark_model.37402_t
Valid prediction for GlimmerHMM_glimmerT_21999-T1
Valid prediction for CodingQuarry_transcript_61936-T1
Valid prediction for snap_scaffold_9-snap.148-T1
Valid prediction for GeneMark_model.37417_t
Valid prediction for GeneMark_model.37390_t
Valid prediction for snap_scaffold_9-snap.120-T1
Valid prediction for GlimmerHMM_glimmerT_21997-T1
Valid prediction for snap_scaffold_9-snap.147-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for HiQ_model.g14711.t1
Valid prediction for GlimmerHMM_glimmerT_21993-T1
Valid prediction for snap_scaffold_9-snap.124-T1
Valid prediction for Augustus_model.g14708.t1
Valid prediction for snap_scaffold_9-snap.154-T1
Valid prediction for GeneMark_model.37388_t
Valid prediction for snap_scaffold_9-snap.156-T1
Valid prediction for snap_scaffold_9-snap.146-T1
Valid prediction for pasa_asmbl_53755.p2
Valid prediction for snap_scaffold_9-snap.125-T1
Valid prediction for snap_scaffold_9-snap.141-T1
Valid prediction for snap_scaffold_9-snap.134-T1
Valid prediction for GlimmerHMM_glimmerT_21983-T1
Couldn't classify 104975, 105325
Sorry, prediction pasa_asmbl_53757.p1 fails validation.
(GGA)	 TA	104975-105325	TA	AGT
Valid prediction for GeneMark_model.37406_t
Valid prediction for GeneMark_model.37411_t
Valid prediction for GlimmerHMM_glimmerT_21998-T1
Valid prediction for GlimmerHMM_glimmerT_21987-T1
Valid prediction for Augustus_model.g14721.t1
Valid prediction for GlimmerHMM_glimmerT_22001-T1
Valid prediction for GlimmerHMM_glimmerT_21985-T1
Valid prediction for GeneMark_model.37374_t
Valid prediction for GeneMark_model.37404_t
Valid prediction for snap_scaffold_9-snap.144-T1
Valid prediction for GeneMark_model.37380_t
Valid prediction for Augustus_model.g14718.t1
Valid prediction for HiQ_model.g14710.t1
Valid prediction for snap_scaffold_9-snap.138-T1
Couldn't classify 117580, 117684
Sorry, prediction pasa_asmbl_53764.p1 fails validation.
(ATG)	 AC	109914-109982	GT	AGG
(ACT)	 AG	111306-111350	GT	AGG
(AAC)	 AG	112471-112560	GT	CGG
(CAA)	 AG	112930-112959	GT	AGG
(AAT)	 AG	113186-113238	GT	AGG
(GAA)	 AG	113559-113654	GT	AAG
(TCC)	 AG	114241-114326	GT	AAG
(ATG)	 AG	114731-114817	GT	AGG
(GTG)	 AG	114945-115114	GT	AGG
(ATT)	 AG	115297-115341	GT	ACG
(ATC)	 AG	116505-116636	GT	AGG
(ACT)	 AG	116911-117039	GT	AGG
(GAG)	 AG	117580-117684	GT	AGG
-recovered pasa_asmbl_53764.p1, initial, 109914, 109982
add_exon() Sorry, pasa_asmbl_53764.p1 114731-114817-initial-1 is invalid.
-recovered pasa_asmbl_53764.p1, initial, 114731, 114817
-recovered pasa_asmbl_53764.p1, terminal, 114731, 114817
-recovered pasa_asmbl_53764.p1, internal, 111306, 111350
-recovered pasa_asmbl_53764.p1, internal, 112471, 112560
-recovered pasa_asmbl_53764.p1, internal, 112930, 112959
-recovered pasa_asmbl_53764.p1, internal, 113186, 113238
-recovered pasa_asmbl_53764.p1, internal, 113559, 113654
-recovered pasa_asmbl_53764.p1, internal, 114241, 114326
-recovered pasa_asmbl_53764.p1, internal, 114731, 114817
-recovered pasa_asmbl_53764.p1, internal, 114945, 115114
-recovered pasa_asmbl_53764.p1, internal, 115297, 115341
-recovered pasa_asmbl_53764.p1, internal, 116505, 116636
-recovered pasa_asmbl_53764.p1, internal, 116911, 117039
-recovered pasa_asmbl_53764.p1, internal, 117580, 117684
Valid prediction for snap_scaffold_9-snap.142-T1
Couldn't classify 35761, 36075
Sorry, prediction pasa_asmbl_53745.p1 fails validation.
(ATG)	 AG	30903-31081	GT	CGG
(GCT)	 AG	32023-32204	GT	GGG
(AGC)	 AG	32953-33128	GT	GGG
(GAC)	 AG	33226-33307	GT	AGG
(GCT)	 AG	33667-33799	GT	AGG
(GTC)	 AG	34193-34284	GT	AGG
(CCG)	 AG	34569-34825	GT	TGG
(TGC)	 AG	35761-36075	AC	CCA
-recovered pasa_asmbl_53745.p1, initial, 30903, 31081
-recovered pasa_asmbl_53745.p1, internal, 30903, 31081
-recovered pasa_asmbl_53745.p1, internal, 32023, 32204
-recovered pasa_asmbl_53745.p1, internal, 32953, 33128
-recovered pasa_asmbl_53745.p1, internal, 33226, 33307
-recovered pasa_asmbl_53745.p1, internal, 33667, 33799
-recovered pasa_asmbl_53745.p1, internal, 34193, 34284
-recovered pasa_asmbl_53745.p1, internal, 34569, 34825
Valid prediction for Augustus_model.g14717.t1
Valid prediction for snap_scaffold_9-snap.151-T1
Valid prediction for GeneMark_model.37415_t
Valid prediction for GlimmerHMM_glimmerT_21980-T1
Valid prediction for GlimmerHMM_glimmerT_21982-T1
Valid prediction for snap_scaffold_9-snap.118-T1
Valid prediction for GeneMark_model.37396_t
Valid prediction for GlimmerHMM_glimmerT_21996-T1
Valid prediction for GlimmerHMM_glimmerT_21986-T1
Couldn't classify 38825, 38864
Sorry, prediction pasa_asmbl_53751.p1 fails validation.
(GAC)	 GA	38825-38864	GT	GTG
(TTA)	 AG	38983-39018	GT	AGG
(TTC)	 AG	39107-39358	GT	TGG
(AGG)	 AG	40987-41241	GT	GGG
(AGG)	 AG	41338-41603	TG	AGT
-recovered pasa_asmbl_53751.p1, terminal, 41338, 41603
-recovered pasa_asmbl_53751.p1, internal, 38983, 39018
-recovered pasa_asmbl_53751.p1, internal, 39107, 39358
-recovered pasa_asmbl_53751.p1, internal, 40987, 41241
Valid prediction for snap_scaffold_9-snap.152-T1
Valid prediction for CodingQuarry_transcript_61940-T1
Valid prediction for CodingQuarry_transcript_61938-T1
Valid prediction for GeneMark_model.37378_t
Valid prediction for CodingQuarry_transcript_61939-T1
Valid prediction for GeneMark_model.37384_t
Valid prediction for GeneMark_model.37385_t
Valid prediction for GeneMark_model.37409_t
Valid prediction for snap_scaffold_9-snap.139-T1
Valid prediction for GeneMark_model.37392_t
Valid prediction for GeneMark_model.37398_t
Valid prediction for GlimmerHMM_glimmerT_22003-T1
Valid prediction for HiQ_model.g14712.t1
Couldn't classify 125410, 125465
Sorry, prediction pasa_asmbl_53770.p1 fails validation.
(CTC)	 GG	125410-125465	GT	CGG
(GTC)	 AG	126909-127071	GT	AGG
(TTC)	 AG	127329-127553	GT	AGG
(GTG)	 AG	127889-128098	GT	AGG
(GAG)	 AG	128777-129361	TC	GAT
-recovered pasa_asmbl_53770.p1, terminal, 128777, 129361
-recovered pasa_asmbl_53770.p1, internal, 126909, 127071
-recovered pasa_asmbl_53770.p1, internal, 127329, 127553
-recovered pasa_asmbl_53770.p1, internal, 127889, 128098
Valid prediction for GeneMark_model.37372_t
Valid prediction for snap_scaffold_9-snap.128-T1
Sorry, intron length (3) is less than minimum required (10)
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 118525, 118690
Sorry, prediction pasa_asmbl_53767.p1 fails validation.
(CAG)	 CC	118525-118690	GT	AGG
(GTT)	 AG	121205-121299	GT	ATG
(GTG)	 AG	121632-121727	AG	AGA
-recovered pasa_asmbl_53767.p1, terminal, 121632, 121727
-recovered pasa_asmbl_53767.p1, internal, 121205, 121299
Valid prediction for GeneMark_model.37400_t
Valid prediction for GlimmerHMM_glimmerT_21994-T1
Valid prediction for GeneMark_model.37382_t
Valid prediction for GeneMark_model.37394_t
Valid prediction for GeneMark_model.37387_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 121837, 122014
Couldn't classify 122497, 122528
Sorry, prediction pasa_asmbl_54774.p3 fails validation.
(TTC)	 CC	121837-122014	GT	AGG
(ACA)	 AG	122224-122379	GT	AGG
(ATA)	 AG	122497-122528	TC	GCT
-recovered pasa_asmbl_54774.p3, internal, 122224, 122379
Valid prediction for GeneMark_model.37416_t
Valid prediction for GeneMark_model.37418_t
Valid prediction for Augustus_model.g14713.t1
Valid prediction for GeneMark_model.37401_t
Couldn't classify 14000, 14053
Sorry, prediction pasa_asmbl_55765.p1 fails validation.
(AAG)	 TG	14000-14053	GT	AGG
(GGG)	 AG	14324-14497	GT	AGG
(GGT)	 AG	15189-15371	GT	AGG
(GAG)	 AG	15767-15999	GT	AGG
(TGT)	 AG	16242-16425	GT	ACG
(GAG)	 AG	16903-17067	GG	GAG
-recovered pasa_asmbl_55765.p1, terminal, 16903, 17067
-recovered pasa_asmbl_55765.p1, internal, 14324, 14497
-recovered pasa_asmbl_55765.p1, internal, 15189, 15371
-recovered pasa_asmbl_55765.p1, internal, 15767, 15999
-recovered pasa_asmbl_55765.p1, internal, 16242, 16425
Valid prediction for GeneMark_model.37371_t
Valid prediction for GlimmerHMM_glimmerT_21989-T1
Valid prediction for snap_scaffold_9-snap.126-T1
Valid prediction for GlimmerHMM_glimmerT_21992-T1
Valid prediction for GeneMark_model.37399_t
Valid prediction for Augustus_model.g14715.t1
Valid prediction for Augustus_model.g14714.t1
Valid prediction for GeneMark_model.37403_t
Valid prediction for GeneMark_model.37379_t
Valid prediction for snap_scaffold_9-snap.131-T1
Valid prediction for GlimmerHMM_glimmerT_21995-T1
Valid prediction for GeneMark_model.37395_t
Valid prediction for snap_scaffold_9-snap.155-T1
Valid prediction for GeneMark_model.37389_t
Valid prediction for snap_scaffold_9-snap.130-T1
Valid prediction for GlimmerHMM_glimmerT_21984-T1
Valid prediction for snap_scaffold_9-snap.119-T1
Valid prediction for snap_scaffold_9-snap.135-T1
Valid prediction for GlimmerHMM_glimmerT_22005-T1
Valid prediction for GeneMark_model.37405_t
Valid prediction for GeneMark_model.37391_t
Valid prediction for Augustus_model.g14716.t1
Valid prediction for GeneMark_model.37377_t
Valid prediction for GeneMark_model.37381_t
Valid prediction for snap_scaffold_9-snap.140-T1
Valid prediction for snap_scaffold_9-snap.149-T1
Valid prediction for GeneMark_model.37407_t
Couldn't classify 7095, 7184
Couldn't classify 7987, 8137
Sorry, prediction pasa_asmbl_54778.p1 fails validation.
(GAG)	 TG	7095-7184	GT	AGG
(CTG)	 AG	7484-7611	GT	GTG
(CCA)	 AG	7743-7883	GT	AAG
(GAA)	 AG	7987-8137	GT	CGG
-recovered pasa_asmbl_54778.p1, internal, 7484, 7611
-recovered pasa_asmbl_54778.p1, internal, 7743, 7883
-recovered pasa_asmbl_54778.p1, internal, 7987, 8137
Valid prediction for GlimmerHMM_glimmerT_22002-T1
Valid prediction for snap_scaffold_9-snap.143-T1
Valid prediction for snap_scaffold_9-snap.132-T1
Couldn't classify 79705, 79822
Sorry, prediction pasa_asmbl_54775.p1 fails validation.
(GAC)	 AG	79705-79822	GT	GAG
(TTG)	 AG	80393-80538	GT	AGG
(CAC)	 AG	81730-81842	GT	GGG
(CTT)	 AG	82507-82579	GT	TGG
(GTG)	 AG	82904-83081	GT	AGG
(ATC)	 AG	83215-83348	CC	AGC
-recovered pasa_asmbl_54775.p1, terminal, 83215, 83348
-recovered pasa_asmbl_54775.p1, internal, 79705, 79822
-recovered pasa_asmbl_54775.p1, internal, 80393, 80538
-recovered pasa_asmbl_54775.p1, internal, 81730, 81842
-recovered pasa_asmbl_54775.p1, internal, 82507, 82579
-recovered pasa_asmbl_54775.p1, internal, 82904, 83081
Valid prediction for GeneMark_model.37386_t
Valid prediction for GlimmerHMM_glimmerT_22000-T1
Valid prediction for GeneMark_model.37412_t
Valid prediction for GeneMark_model.37410_t
Valid prediction for snap_scaffold_9-snap.127-T1
Couldn't classify 138547, 139818
Sorry, prediction pasa_asmbl_54772.p1 fails validation.
(CTT)	 TC	138547-139818	GG	GAG
Valid prediction for snap_scaffold_9-snap.129-T1
Valid prediction for snap_scaffold_9-snap.136-T1
Valid prediction for Augustus_model.g14706.t1
Valid prediction for GeneMark_model.37383_t
Valid prediction for Augustus_model.g14709.t1
Valid prediction for GlimmerHMM_glimmerT_21990-T1
Valid prediction for GeneMark_model.37397_t
Valid prediction for GeneMark_model.37408_t
Valid prediction for snap_scaffold_9-snap.153-T1
Valid prediction for snap_scaffold_9-snap.145-T1
Valid prediction for snap_scaffold_9-snap.122-T1
Valid prediction for Augustus_model.g14722.t1
Valid prediction for GlimmerHMM_glimmerT_21981-T1
Valid prediction for snap_scaffold_9-snap.150-T1
Valid prediction for GeneMark_model.37414_t
Valid prediction for GeneMark_model.37393_t
Valid prediction for GlimmerHMM_glimmerT_22004-T1
Valid prediction for GeneMark_model.37375_t
Valid prediction for snap_scaffold_9-snap.123-T1
Valid prediction for GeneMark_model.37373_t
Valid prediction for GlimmerHMM_glimmerT_21991-T1
Valid prediction for snap_scaffold_9-snap.133-T1
Couldn't classify 9139, 9273
Couldn't classify 12092, 12105
Sorry, prediction pasa_asmbl_54777.p1 fails validation.
(GAG)	 AG	9139-9273	GT	TGG
(GGT)	 AG	10755-10916	GT	AGG
(ATG)	 AG	11603-11828	GT	TGG
(GCA)	 AG	12092-12105	GG	GAG
-recovered pasa_asmbl_54777.p1, initial, 11603, 11828
-recovered pasa_asmbl_54777.p1, internal, 9139, 9273
-recovered pasa_asmbl_54777.p1, internal, 10755, 10916
-recovered pasa_asmbl_54777.p1, internal, 11603, 11828

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4392, rend_intergenic: 1565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15523, rend_intergenic: 10740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22389, rend_intergenic: 17809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24321, rend_intergenic: 23066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51294, rend_intergenic: 30915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59575, rend_intergenic: 57778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62068, rend_intergenic: 59660  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74512, rend_intergenic: 67012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80455, rend_intergenic: 79486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92876, rend_intergenic: 80695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93030, rend_intergenic: 92878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105231, rend_intergenic: 93086  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108865, rend_intergenic: 106604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120312, rend_intergenic: 114967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124200, rend_intergenic: 120415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129361, rend_intergenic: 126133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133136, rend_intergenic: 131254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143412, rend_intergenic: 133194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 148320
-exon list size: 801


building trellis

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36.4    
36.5    
36.6    
36.7    
36.9    
37.0    
37.1    
37.2    
37.4    
37.5    
37.6    
37.7    
37.9    
38.0    
38.1    
38.2    
38.4    
38.5    
38.6    
38.7    
38.9    
39.0    
39.1    
39.2    
39.4    
39.5    
39.6    
39.7    
39.9    
40.0    
40.1    
40.2    
40.3    
40.5    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.3    
41.5    
41.6    
41.7    
41.8    
42.0    
42.1    
42.2    
42.3    
42.5    
42.6    
42.7    
42.8    
43.0    
43.1    
43.2    
43.3    
43.5    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.8    
45.0    
45.1    
45.2    
45.3    
45.5    
45.6    
45.7    
45.8    
46.0    
46.1    
46.2    
46.3    
46.5    
46.6    
46.7    
46.8    
46.9    
47.1    
47.2    
47.3    
47.4    
47.6    
47.7    
47.8    
47.9    
48.1    
48.2    
48.3    
48.4    
48.6    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.4    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.1    
52.2    
52.3    
52.4    
52.6    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.7    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.5    
58.7    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.5    
59.7    
59.8    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.1    
61.3    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.8    
62.9    
63.0    
63.1    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.1    
65.3    
65.4    
65.5    
65.6    
65.8    
65.9    
66.0    
66.1    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.4    
67.5    
67.6    
67.7    
67.9    
68.0    
68.1    
68.2    
68.4    
68.5    
68.6    
68.7    
68.9    
69.0    
69.1    
69.2    
69.4    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.9    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.7    
71.9    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.7    
72.9    
73.0    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.8    
74.0    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
75.0    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.8    
77.0    
77.1    
77.2    
77.3    
77.5    
77.6    
77.7    
77.8    
78.0    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.1    
81.2    
81.3    
81.4    
81.6    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.4    
83.6    
83.7    
83.8    
83.9    
84.1    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
84.9    
85.1    
85.2    
85.3    
85.4    
85.6    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.7    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.0    
90.2    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.5    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 4392, rend_intergenic: 1565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15523, rend_intergenic: 10740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22389, rend_intergenic: 17809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24321, rend_intergenic: 23066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51294, rend_intergenic: 30915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59575, rend_intergenic: 57778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62068, rend_intergenic: 59660  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74512, rend_intergenic: 67012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80455, rend_intergenic: 79486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92876, rend_intergenic: 80695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93030, rend_intergenic: 92878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105231, rend_intergenic: 93086  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108865, rend_intergenic: 106604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120312, rend_intergenic: 114967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124200, rend_intergenic: 120415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129361, rend_intergenic: 126133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133136, rend_intergenic: 131254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143412, rend_intergenic: 133194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support