-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_3859308-4188790 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g14998.t1 Valid prediction for snap_scaffold_9-snap.903-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.38464_t Valid prediction for GeneMark_model.38466_t Valid prediction for GlimmerHMM_glimmerT_22418-T1 Valid prediction for snap_scaffold_9-snap.859-T1 Valid prediction for GeneMark_model.38448_t Valid prediction for GeneMark_model.38429_t Valid prediction for GlimmerHMM_glimmerT_22432-T1 Valid prediction for snap_scaffold_9-snap.893-T1 Valid prediction for GeneMark_model.38460_t Couldn't classify 134869, 135017 Sorry, prediction GeneMark_model.38467_t fails validation. (TCA) AG 134869-135017 GT GAG (GGC) AG 135662-135756 GT AAG (GGA) AG 136173-136247 GT AGG (AGA) AG 136406-136504 GT AGG (GGG) AG 136531-136548 GT GGG (AGA) AG 136578-136640 GT AGG (GAG) AG 136687-136692 GT GGG (AGA) AG 136845-136859 GT AGG (CCA) AG 137036-137044 GT GAG (CGA) AG 137071-137094 GT GAG (AAG) AG 137121-137156 GT GAG (GGA) AG 137904-137916 GT CTG (ACA) AG 138014-138030 GT GGG (GGG) AG 138052-138162 GT AGG (AGA) AG 138193-138400 CC AGC -recovered GeneMark_model.38467_t, terminal, 138193, 138400 -recovered GeneMark_model.38467_t, internal, 134869, 135017 -recovered GeneMark_model.38467_t, internal, 135662, 135756 -recovered GeneMark_model.38467_t, internal, 136173, 136247 -recovered GeneMark_model.38467_t, internal, 136406, 136504 -recovered GeneMark_model.38467_t, internal, 136531, 136548 -recovered GeneMark_model.38467_t, internal, 136578, 136640 -recovered GeneMark_model.38467_t, internal, 136687, 136692 -recovered GeneMark_model.38467_t, internal, 136845, 136859 -recovered GeneMark_model.38467_t, internal, 137036, 137044 -recovered GeneMark_model.38467_t, internal, 137071, 137094 -recovered GeneMark_model.38467_t, internal, 137121, 137156 -recovered GeneMark_model.38467_t, internal, 137904, 137916 -recovered GeneMark_model.38467_t, internal, 138014, 138030 -recovered GeneMark_model.38467_t, internal, 138052, 138162 Valid prediction for snap_scaffold_9-snap.902-T1 Valid prediction for GlimmerHMM_glimmerT_22448-T1 Valid prediction for GlimmerHMM_glimmerT_22446-T1 Valid prediction for GeneMark_model.38514_t Couldn't classify 63265, 63265 Sorry, prediction CodingQuarry_transcript_61988-T1 fails validation. (ATG) GC 62694-62769 GT GGG (ATG) AG 63049-63115 GT TGG (ATG) AG 63265-63265 TG GAT -recovered CodingQuarry_transcript_61988-T1, initial, 62694, 62769 -recovered CodingQuarry_transcript_61988-T1, initial, 63049, 63115 -recovered CodingQuarry_transcript_61988-T1, internal, 63049, 63115 Valid prediction for GlimmerHMM_glimmerT_22415-T1 Valid prediction for GeneMark_model.38528_t Valid prediction for GlimmerHMM_glimmerT_22430-T1 Valid prediction for snap_scaffold_9-snap.842-T1 Valid prediction for GeneMark_model.38539_t Valid prediction for Augustus_model.g15008.t1 Valid prediction for GeneMark_model.38518_t Valid prediction for snap_scaffold_9-snap.850-T1 Valid prediction for snap_scaffold_9-snap.840-T1 Couldn't classify 65337, 65337 Sorry, prediction CodingQuarry_transcript_61989-T1 fails validation. (ATG) GC 62694-62769 GT GGG (ATG) AG 63049-63115 GT TGG (ATG) AG 65337-65337 TG GAT -recovered CodingQuarry_transcript_61989-T1, initial, 62694, 62769 -recovered CodingQuarry_transcript_61989-T1, initial, 63049, 63115 -recovered CodingQuarry_transcript_61989-T1, internal, 63049, 63115 Valid prediction for snap_scaffold_9-snap.900-T1 Valid prediction for GeneMark_model.38505_t Valid prediction for GeneMark_model.38516_t Valid prediction for GeneMark_model.38428_t Valid prediction for snap_scaffold_9-snap.874-T1 Valid prediction for Augustus_model.g15017.t1 Valid prediction for GeneMark_model.38477_t Valid prediction for GeneMark_model.38452_t Valid prediction for snap_scaffold_9-snap.894-T1 Valid prediction for GeneMark_model.38526_t Valid prediction for GeneMark_model.38507_t Valid prediction for snap_scaffold_9-snap.887-T1 Valid prediction for snap_scaffold_9-snap.905-T1 Valid prediction for GeneMark_model.38524_t Valid prediction for GeneMark_model.38441_t Valid prediction for GeneMark_model.38437_t Valid prediction for GeneMark_model.38430_t Valid prediction for GeneMark_model.38427_t Valid prediction for GlimmerHMM_glimmerT_22441-T1 Valid prediction for Augustus_model.g14997.t1 Valid prediction for GeneMark_model.38481_t Valid prediction for GeneMark_model.38489_t Valid prediction for Augustus_model.g15007.t1 Valid prediction for GeneMark_model.38497_t Valid prediction for Augustus_model.g15019.t1 Valid prediction for snap_scaffold_9-snap.851-T1 Valid prediction for GlimmerHMM_glimmerT_22433-T1 Valid prediction for GeneMark_model.38502_t Valid prediction for GlimmerHMM_glimmerT_22420-T1 Valid prediction for GeneMark_model.38512_t Valid prediction for snap_scaffold_9-snap.882-T1 Valid prediction for snap_scaffold_9-snap.843-T1 Valid prediction for snap_scaffold_9-snap.861-T1 Valid prediction for GlimmerHMM_glimmerT_22451-T1 Valid prediction for GeneMark_model.38487_t Valid prediction for snap_scaffold_9-snap.897-T1 Valid prediction for GeneMark_model.38443_t Valid prediction for GlimmerHMM_glimmerT_22429-T1 Valid prediction for Augustus_model.g15022.t1 Valid prediction for snap_scaffold_9-snap.896-T1 Valid prediction for Augustus_model.g15001.t1 Valid prediction for snap_scaffold_9-snap.872-T1 Valid prediction for snap_scaffold_9-snap.885-T1 Valid prediction for GeneMark_model.38445_t Valid prediction for snap_scaffold_9-snap.869-T1 Valid prediction for GeneMark_model.38462_t Valid prediction for GeneMark_model.38458_t Valid prediction for GeneMark_model.38532_t Valid prediction for Augustus_model.g15018.t1 Valid prediction for Augustus_model.g15010.t1 Valid prediction for GeneMark_model.38450_t Valid prediction for GlimmerHMM_glimmerT_22426-T1 Valid prediction for GeneMark_model.38456_t Valid prediction for Augustus_model.g15011.t1 Valid prediction for snap_scaffold_9-snap.881-T1 Valid prediction for GlimmerHMM_glimmerT_22425-T1 Valid prediction for GeneMark_model.38479_t Valid prediction for snap_scaffold_9-snap.857-T1 Valid prediction for snap_scaffold_9-snap.855-T1 Valid prediction for snap_scaffold_9-snap.865-T1 Valid prediction for snap_scaffold_9-snap.852-T1 Valid prediction for GlimmerHMM_glimmerT_22431-T1 Valid prediction for GeneMark_model.38499_t Valid prediction for snap_scaffold_9-snap.906-T1 Valid prediction for GeneMark_model.38491_t Valid prediction for GlimmerHMM_glimmerT_22423-T1 Valid prediction for snap_scaffold_9-snap.908-T1 Couldn't classify 142201, 142399 Sorry, prediction GeneMark_model.38470_t fails validation. (ATG) CT 141865-141890 GT GTG (GCC) AG 141919-142119 GT AGG (GGC) AG 142145-142168 GT GGG (GGA) AG 142201-142399 GT TGG -recovered GeneMark_model.38470_t, initial, 141865, 141890 -recovered GeneMark_model.38470_t, internal, 141919, 142119 -recovered GeneMark_model.38470_t, internal, 142145, 142168 -recovered GeneMark_model.38470_t, internal, 142201, 142399 Valid prediction for Augustus_model.g15003.t1 Valid prediction for snap_scaffold_9-snap.891-T1 Valid prediction for GlimmerHMM_glimmerT_22416-T1 Valid prediction for GeneMark_model.38509_t Valid prediction for Augustus_model.g15006.t1 Valid prediction for GeneMark_model.38496_t Valid prediction for GlimmerHMM_glimmerT_22445-T1 Valid prediction for GeneMark_model.38541_t Valid prediction for GlimmerHMM_glimmerT_22427-T1 Valid prediction for GeneMark_model.38531_t Valid prediction for snap_scaffold_9-snap.889-T1 Valid prediction for snap_scaffold_9-snap.895-T1 Valid prediction for GeneMark_model.38534_t Valid prediction for Augustus_model.g15009.t1 Valid prediction for GeneMark_model.38475_t Valid prediction for snap_scaffold_9-snap.883-T1 Valid prediction for GeneMark_model.38472_t Valid prediction for snap_scaffold_9-snap.888-T1 Valid prediction for GeneMark_model.38536_t Valid prediction for GlimmerHMM_glimmerT_22413-T1 Valid prediction for GlimmerHMM_glimmerT_22428-T1 Valid prediction for snap_scaffold_9-snap.844-T1 Valid prediction for GeneMark_model.38435_t Valid prediction for GlimmerHMM_glimmerT_22434-T1 Valid prediction for GeneMark_model.38484_t Valid prediction for GlimmerHMM_glimmerT_22424-T1 Valid prediction for GeneMark_model.38432_t Valid prediction for snap_scaffold_9-snap.863-T1 Valid prediction for GeneMark_model.38510_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.38527_t Valid prediction for GeneMark_model.38459_t Valid prediction for GeneMark_model.38465_t Valid prediction for GeneMark_model.38474_t Valid prediction for snap_scaffold_9-snap.884-T1 Valid prediction for HiQ_model.g15021.t1 Valid prediction for GeneMark_model.38513_t Valid prediction for GeneMark_model.38442_t Valid prediction for GeneMark_model.38511_t Valid prediction for pasa_asmbl_54919.p1 Valid prediction for snap_scaffold_9-snap.877-T1 Valid prediction for Augustus_model.g15005.t1 Valid prediction for GlimmerHMM_glimmerT_22421-T1 Valid prediction for GlimmerHMM_glimmerT_22412-T1 Valid prediction for GeneMark_model.38517_t Valid prediction for snap_scaffold_9-snap.841-T1 Valid prediction for GeneMark_model.38530_t Valid prediction for GeneMark_model.38447_t Valid prediction for snap_scaffold_9-snap.875-T1 Valid prediction for snap_scaffold_9-snap.879-T1 Valid prediction for GeneMark_model.38451_t Valid prediction for GeneMark_model.38506_t Valid prediction for GlimmerHMM_glimmerT_22436-T1 Valid prediction for GeneMark_model.38501_t Valid prediction for Augustus_model.g15004.t1 Valid prediction for Augustus_model.g15020.t1 Valid prediction for GeneMark_model.38500_t Valid prediction for GeneMark_model.38490_t Valid prediction for Augustus_model.g15016.t1 Couldn't classify 42657, 42862 Couldn't classify 43076, 43187 Sorry, prediction pasa_asmbl_55719.p2 fails validation. (GTG) AG 42657-42862 GT AAG (GCT) AG 43076-43187 GA ACG -recovered pasa_asmbl_55719.p2, internal, 42657, 42862 Valid prediction for GeneMark_model.38480_t Valid prediction for GeneMark_model.38540_t Valid prediction for snap_scaffold_9-snap.856-T1 Valid prediction for snap_scaffold_9-snap.849-T1 Valid prediction for snap_scaffold_9-snap.858-T1 Valid prediction for snap_scaffold_9-snap.904-T1 Valid prediction for GlimmerHMM_glimmerT_22437-T1 Valid prediction for snap_scaffold_9-snap.909-T1 Valid prediction for snap_scaffold_9-snap.860-T1 Valid prediction for GlimmerHMM_glimmerT_22449-T1 Valid prediction for Augustus_model.g15000.t1 Valid prediction for Augustus_model.g15013.t1 Valid prediction for Augustus_model.g15012.t1 Valid prediction for snap_scaffold_9-snap.907-T1 Valid prediction for CodingQuarry_transcript_61987-T1 Valid prediction for snap_scaffold_9-snap.873-T1 Valid prediction for GeneMark_model.38493_t Valid prediction for GeneMark_model.38503_t Valid prediction for Augustus_model.g15014.t1 Valid prediction for snap_scaffold_9-snap.890-T1 Valid prediction for GeneMark_model.38461_t Valid prediction for Augustus_model.g14993.t1 Valid prediction for snap_scaffold_9-snap.901-T1 Valid prediction for pasa_asmbl_54922.p1 Valid prediction for snap_scaffold_9-snap.846-T1 Valid prediction for GeneMark_model.38444_t Valid prediction for GeneMark_model.38454_t Valid prediction for snap_scaffold_9-snap.876-T1 Valid prediction for GlimmerHMM_glimmerT_22414-T1 Valid prediction for Augustus_model.g15015.t1 Valid prediction for snap_scaffold_9-snap.878-T1 Valid prediction for Augustus_model.g14995.t1 Valid prediction for GeneMark_model.38533_t Valid prediction for GeneMark_model.38482_t Valid prediction for GeneMark_model.38476_t Valid prediction for GeneMark_model.38426_t Valid prediction for snap_scaffold_9-snap.870-T1 Valid prediction for GeneMark_model.38436_t Valid prediction for GlimmerHMM_glimmerT_22422-T1 Valid prediction for GeneMark_model.38498_t Valid prediction for GlimmerHMM_glimmerT_22438-T1 Valid prediction for GeneMark_model.38486_t Valid prediction for snap_scaffold_9-snap.868-T1 Valid prediction for GeneMark_model.38478_t Valid prediction for GlimmerHMM_glimmerT_22442-T1 Valid prediction for GeneMark_model.38469_t Valid prediction for GeneMark_model.38488_t Valid prediction for pasa_asmbl_54913.p1 Valid prediction for GeneMark_model.38504_t Valid prediction for GeneMark_model.38485_t Valid prediction for GlimmerHMM_glimmerT_22447-T1 Valid prediction for GeneMark_model.38538_t Valid prediction for Augustus_model.g15002.t1 Valid prediction for GeneMark_model.38457_t Valid prediction for snap_scaffold_9-snap.862-T1 Valid prediction for GlimmerHMM_glimmerT_22444-T1 Couldn't classify 45405, 45516 Sorry, prediction pasa_asmbl_54917.p1 fails validation. (GCA) CT 45405-45516 GT AGG (CTT) AG 45875-46011 GT AGG (ATC) AG 46346-46528 AG GAA -recovered pasa_asmbl_54917.p1, terminal, 46346, 46528 -recovered pasa_asmbl_54917.p1, internal, 45875, 46011 Valid prediction for GeneMark_model.38453_t Valid prediction for snap_scaffold_9-snap.892-T1 Valid prediction for GeneMark_model.38473_t Valid prediction for snap_scaffold_9-snap.848-T1 Valid prediction for snap_scaffold_9-snap.899-T1 Valid prediction for GlimmerHMM_glimmerT_22440-T1 Valid prediction for CodingQuarry_transcript_61990-T1 Valid prediction for GlimmerHMM_glimmerT_22439-T1 Valid prediction for GeneMark_model.38529_t Valid prediction for snap_scaffold_9-snap.847-T1 Valid prediction for GeneMark_model.38537_t Valid prediction for GeneMark_model.38455_t Valid prediction for GeneMark_model.38508_t Valid prediction for GeneMark_model.38449_t Valid prediction for GeneMark_model.38463_t Valid prediction for snap_scaffold_9-snap.886-T1 Valid prediction for snap_scaffold_9-snap.854-T1 Valid prediction for GeneMark_model.38433_t Valid prediction for snap_scaffold_9-snap.853-T1 Valid prediction for snap_scaffold_9-snap.866-T1 Valid prediction for HiQ_model.g14999.t1 Valid prediction for GeneMark_model.38431_t Valid prediction for GeneMark_model.38519_t Valid prediction for snap_scaffold_9-snap.867-T1 Valid prediction for snap_scaffold_9-snap.864-T1 Valid prediction for GlimmerHMM_glimmerT_22443-T1 Valid prediction for GeneMark_model.38494_t Valid prediction for Augustus_model.g14996.t1 Valid prediction for snap_scaffold_9-snap.871-T1 Valid prediction for GlimmerHMM_glimmerT_22417-T1 Valid prediction for GeneMark_model.38439_t Valid prediction for GeneMark_model.38523_t Valid prediction for GeneMark_model.38535_t Valid prediction for GeneMark_model.38522_t Valid prediction for snap_scaffold_9-snap.898-T1 Valid prediction for GeneMark_model.38492_t Valid prediction for GeneMark_model.38525_t Valid prediction for CodingQuarry_transcript_61986-T1 Valid prediction for GeneMark_model.38468_t Couldn't classify 180300, 180322 Sorry, prediction GeneMark_model.38471_t fails validation. (ATG) GG 178597-178628 GT GGG (AGA) AG 178997-179020 GT CTG (AGA) AG 179047-179052 GT CTG (AGA) AG 179079-179084 GT CTG (AGT) AG 179111-179122 GC AGG (AGG) AG 179148-179297 GT GGG (GGG) AG 179325-179333 GC GGG (ATG) AG 179358-179399 GT GGG (AGA) AG 179422-179436 GT GGG (GAG) AG 179459-179472 GT TGG (AAC) AG 179980-180070 GT CAG (AGA) AG 180106-180243 GT CAG (GGA) AG 180300-180322 GT GGG -recovered GeneMark_model.38471_t, initial, 178597, 178628 -recovered GeneMark_model.38471_t, initial, 179358, 179399 -recovered GeneMark_model.38471_t, internal, 178997, 179020 -recovered GeneMark_model.38471_t, internal, 179047, 179052 -recovered GeneMark_model.38471_t, internal, 179079, 179084 -recovered GeneMark_model.38471_t, internal, 179111, 179122 -recovered GeneMark_model.38471_t, internal, 179148, 179297 -recovered GeneMark_model.38471_t, internal, 179325, 179333 -recovered GeneMark_model.38471_t, internal, 179358, 179399 -recovered GeneMark_model.38471_t, internal, 179422, 179436 -recovered GeneMark_model.38471_t, internal, 179459, 179472 -recovered GeneMark_model.38471_t, internal, 179980, 180070 -recovered GeneMark_model.38471_t, internal, 180106, 180243 -recovered GeneMark_model.38471_t, internal, 180300, 180322 Valid prediction for GlimmerHMM_glimmerT_22450-T1 Valid prediction for GeneMark_model.38438_t Valid prediction for GeneMark_model.38520_t Valid prediction for snap_scaffold_9-snap.845-T1 Valid prediction for GlimmerHMM_glimmerT_22411-T1 Valid prediction for GeneMark_model.38521_t Valid prediction for GlimmerHMM_glimmerT_22419-T1 Valid prediction for GeneMark_model.38483_t Valid prediction for GlimmerHMM_glimmerT_22435-T1 Valid prediction for GeneMark_model.38515_t Valid prediction for Augustus_model.g14994.t1 Valid prediction for snap_scaffold_9-snap.880-T1 Valid prediction for GeneMark_model.38495_t Valid prediction for GeneMark_model.38446_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10526, rend_intergenic: 5830 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22262, rend_intergenic: 10815 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27475, rend_intergenic: 22756 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49161, rend_intergenic: 47836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53750, rend_intergenic: 51929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64872, rend_intergenic: 63688 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66780, rend_intergenic: 65477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71665, rend_intergenic: 69411 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84880, rend_intergenic: 79491 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91122, rend_intergenic: 85165 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104725, rend_intergenic: 91260 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109601, rend_intergenic: 105157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138400, rend_intergenic: 109747 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140165, rend_intergenic: 138415 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142456, rend_intergenic: 140197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 150887, rend_intergenic: 142993 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189168, rend_intergenic: 152791 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191383, rend_intergenic: 189170 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 206037, rend_intergenic: 203465 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208461, rend_intergenic: 206776 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219454, rend_intergenic: 212136 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 225735, rend_intergenic: 220340 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232111, rend_intergenic: 228919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241752, rend_intergenic: 232439 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 281577, rend_intergenic: 247220 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 296338, rend_intergenic: 282956 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 299823, rend_intergenic: 297529 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 301768, rend_intergenic: 300312 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 314407, rend_intergenic: 308858 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 317377, rend_intergenic: 314457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 320509, rend_intergenic: 318998 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 322330, rend_intergenic: 320568 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 328269, rend_intergenic: 325216 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 329483 -exon list size: 1370 building trellis 0.1 0.1 0.2 0.3 0.4 0.4 0.5 0.6 0.7 0.7 0.8 0.9 0.9 1.0 1.1 1.2 1.2 1.3 1.4 1.5 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.0 2.1 2.2 2.3 2.3 2.4 2.5 2.6 2.6 2.7 2.8 2.8 2.9 3.0 3.1 3.1 3.2 3.3 3.4 3.4 3.5 3.6 3.6 3.7 3.8 3.9 3.9 4.0 4.1 4.2 4.2 4.3 4.4 4.4 4.5 4.6 4.7 4.7 4.8 4.9 5.0 5.0 5.1 5.2 5.2 5.3 5.4 5.5 5.5 5.6 5.7 5.8 5.8 5.9 6.0 6.0 6.1 6.2 6.3 6.3 6.4 6.5 6.6 6.6 6.7 6.8 6.9 6.9 7.0 7.1 7.1 7.2 7.3 7.4 7.4 7.5 7.6 7.7 7.7 7.8 7.9 7.9 8.0 8.1 8.2 8.2 8.3 8.4 8.5 8.5 8.6 8.7 8.7 8.8 8.9 9.0 9.0 9.1 9.2 9.3 9.3 9.4 9.5 9.5 9.6 9.7 9.8 9.8 9.9 10.0 10.1 10.1 10.2 10.3 10.3 10.4 10.5 10.6 10.6 10.7 10.8 10.9 10.9 11.0 11.1 11.2 11.2 11.3 11.4 11.4 11.5 11.6 11.7 11.7 11.8 11.9 12.0 12.0 12.1 12.2 12.2 12.3 12.4 12.5 12.5 12.6 12.7 12.8 12.8 12.9 13.0 13.0 13.1 13.2 13.3 13.3 13.4 13.5 13.6 13.6 13.7 13.8 13.8 13.9 14.0 14.1 14.1 14.2 14.3 14.4 14.4 14.5 14.6 14.7 14.7 14.8 14.9 14.9 15.0 15.1 15.2 15.2 15.3 15.4 15.5 15.5 15.6 15.7 15.7 15.8 15.9 16.0 16.0 16.1 16.2 16.3 16.3 16.4 16.5 16.5 16.6 16.7 16.8 16.8 16.9 17.0 17.1 17.1 17.2 17.3 17.3 17.4 17.5 17.6 17.6 17.7 17.8 17.9 17.9 18.0 18.1 18.1 18.2 18.3 18.4 18.4 18.5 18.6 18.7 18.7 18.8 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.4 19.5 19.5 19.6 19.7 19.8 19.8 19.9 20.0 20.0 20.1 20.2 20.3 20.3 20.4 20.5 20.6 20.6 20.7 20.8 20.8 20.9 21.0 21.1 21.1 21.2 21.3 21.4 21.4 21.5 21.6 21.6 21.7 21.8 21.9 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.4 22.5 22.6 22.7 22.7 22.8 22.9 23.0 23.0 23.1 23.2 23.3 23.3 23.4 23.5 23.5 23.6 23.7 23.8 23.8 23.9 24.0 24.1 24.1 24.2 24.3 24.3 24.4 24.5 24.6 24.6 24.7 24.8 24.9 24.9 25.0 25.1 25.1 25.2 25.3 25.4 25.4 25.5 25.6 25.7 25.7 25.8 25.9 25.9 26.0 26.1 26.2 26.2 26.3 26.4 26.5 26.5 26.6 26.7 26.7 26.8 26.9 27.0 27.0 27.1 27.2 27.3 27.3 27.4 27.5 27.6 27.6 27.7 27.8 27.8 27.9 28.0 28.1 28.1 28.2 28.3 28.4 28.4 28.5 28.6 28.6 28.7 28.8 28.9 28.9 29.0 29.1 29.2 29.2 29.3 29.4 29.4 29.5 29.6 29.7 29.7 29.8 29.9 30.0 30.0 30.1 30.2 30.2 30.3 30.4 30.5 30.5 30.6 30.7 30.8 30.8 30.9 31.0 31.0 31.1 31.2 31.3 31.3 31.4 31.5 31.6 31.6 31.7 31.8 31.9 31.9 32.0 32.1 32.1 32.2 32.3 32.4 32.4 32.5 32.6 32.7 32.7 32.8 32.9 32.9 33.0 33.1 33.2 33.2 33.3 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.9 34.0 34.0 34.1 34.2 34.3 34.3 34.4 34.5 34.5 34.6 34.7 34.8 34.8 34.9 35.0 35.1 35.1 35.2 35.3 35.3 35.4 35.5 35.6 35.6 35.7 35.8 35.9 35.9 36.0 36.1 36.2 36.2 36.3 36.4 36.4 36.5 36.6 36.7 36.7 36.8 36.9 37.0 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.8 37.9 38.0 38.0 38.1 38.2 38.3 38.3 38.4 38.5 38.6 38.6 38.7 38.8 38.8 38.9 39.0 39.1 39.1 39.2 39.3 39.4 39.4 39.5 39.6 39.7 39.7 39.8 39.9 39.9 40.0 40.1 40.2 40.2 40.3 40.4 40.5 40.5 40.6 40.7 40.7 40.8 40.9 41.0 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.5 41.6 41.7 41.8 41.8 41.9 42.0 42.1 42.1 42.2 42.3 42.3 42.4 42.5 42.6 42.6 42.7 42.8 42.9 42.9 43.0 43.1 43.1 43.2 43.3 43.4 43.4 43.5 43.6 43.7 43.7 43.8 43.9 44.0 44.0 44.1 44.2 44.2 44.3 44.4 44.5 44.5 44.6 44.7 44.8 44.8 44.9 45.0 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.6 45.6 45.7 45.8 45.8 45.9 46.0 46.1 46.1 46.2 46.3 46.4 46.4 46.5 46.6 46.6 46.7 46.8 46.9 46.9 47.0 47.1 47.2 47.2 47.3 47.4 47.4 47.5 47.6 47.7 47.7 47.8 47.9 48.0 48.0 48.1 48.2 48.3 48.3 48.4 48.5 48.5 48.6 48.7 48.8 48.8 48.9 49.0 49.1 49.1 49.2 49.3 49.3 49.4 49.5 49.6 49.6 49.7 49.8 49.9 49.9 50.0 50.1 50.1 50.2 50.3 50.4 50.4 50.5 50.6 50.7 50.7 50.8 50.9 50.9 51.0 51.1 51.2 51.2 51.3 51.4 51.5 51.5 51.6 51.7 51.7 51.8 51.9 52.0 52.0 52.1 52.2 52.3 52.3 52.4 52.5 52.6 52.6 52.7 52.8 52.8 52.9 53.0 53.1 53.1 53.2 53.3 53.4 53.4 53.5 53.6 53.6 53.7 53.8 53.9 53.9 54.0 54.1 54.2 54.2 54.3 54.4 54.4 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.0 55.1 55.2 55.2 55.3 55.4 55.5 55.5 55.6 55.7 55.8 55.8 55.9 56.0 56.0 56.1 56.2 56.3 56.3 56.4 56.5 56.6 56.6 56.7 56.8 56.9 56.9 57.0 57.1 57.1 57.2 57.3 57.4 57.4 57.5 57.6 57.7 57.7 57.8 57.9 57.9 58.0 58.1 58.2 58.2 58.3 58.4 58.5 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.0 59.1 59.2 59.3 59.3 59.4 59.5 59.5 59.6 59.7 59.8 59.8 59.9 60.0 60.1 60.1 60.2 60.3 60.3 60.4 60.5 60.6 60.6 60.7 60.8 60.9 60.9 61.0 61.1 61.2 61.2 61.3 61.4 61.4 61.5 61.6 61.7 61.7 61.8 61.9 62.0 62.0 62.1 62.2 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.0 63.1 63.2 63.3 63.3 63.4 63.5 63.6 63.6 63.7 63.8 63.8 63.9 64.0 64.1 64.1 64.2 64.3 64.4 64.4 64.5 64.6 64.7 64.7 64.8 64.9 64.9 65.0 65.1 65.2 65.2 65.3 65.4 65.5 65.5 65.6 65.7 65.7 65.8 65.9 66.0 66.0 66.1 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.7 66.8 66.8 66.9 67.0 67.1 67.1 67.2 67.3 67.3 67.4 67.5 67.6 67.6 67.7 67.8 67.9 67.9 68.0 68.1 68.1 68.2 68.3 68.4 68.4 68.5 68.6 68.7 68.7 68.8 68.9 69.0 69.0 69.1 69.2 69.2 69.3 69.4 69.5 69.5 69.6 69.7 69.8 69.8 69.9 70.0 70.0 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.6 70.7 70.8 70.8 70.9 71.0 71.1 71.1 71.2 71.3 71.4 71.4 71.5 71.6 71.6 71.7 71.8 71.9 71.9 72.0 72.1 72.2 72.2 72.3 72.4 72.4 72.5 72.6 72.7 72.7 72.8 72.9 73.0 73.0 73.1 73.2 73.3 73.3 73.4 73.5 73.5 73.6 73.7 73.8 73.8 73.9 74.0 74.1 74.1 74.2 74.3 74.3 74.4 74.5 74.6 74.6 74.7 74.8 74.9 74.9 75.0 75.1 75.1 75.2 75.3 75.4 75.4 75.5 75.6 75.7 75.7 75.8 75.9 75.9 76.0 76.1 76.2 76.2 76.3 76.4 76.5 76.5 76.6 76.7 76.7 76.8 76.9 77.0 77.0 77.1 77.2 77.3 77.3 77.4 77.5 77.6 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.1 78.2 78.3 78.4 78.4 78.5 78.6 78.6 78.7 78.8 78.9 78.9 79.0 79.1 79.2 79.2 79.3 79.4 79.4 79.5 79.6 79.7 79.7 79.8 79.9 80.0 80.0 80.1 80.2 80.2 80.3 80.4 80.5 80.5 80.6 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.2 81.3 81.3 81.4 81.5 81.6 81.6 81.7 81.8 81.9 81.9 82.0 82.1 82.1 82.2 82.3 82.4 82.4 82.5 82.6 82.7 82.7 82.8 82.9 82.9 83.0 83.1 83.2 83.2 83.3 83.4 83.5 83.5 83.6 83.7 83.7 83.8 83.9 84.0 84.0 84.1 84.2 84.3 84.3 84.4 84.5 84.5 84.6 84.7 84.8 84.8 84.9 85.0 85.1 85.1 85.2 85.3 85.3 85.4 85.5 85.6 85.6 85.7 85.8 85.9 85.9 86.0 86.1 86.2 86.2 86.3 86.4 86.4 86.5 86.6 86.7 86.7 86.8 86.9 87.0 87.0 87.1 87.2 87.2 87.3 87.4 87.5 87.5 87.6 87.7 87.8 87.8 87.9 88.0 88.0 88.1 88.2 88.3 88.3 88.4 88.5 88.6 88.6 88.7 88.8 88.8 88.9 89.0 89.1 89.1 89.2 89.3 89.4 89.4 89.5 89.6 89.7 89.7 89.8 89.9 89.9 90.0 90.1 90.2 90.2 90.3 90.4 90.5 90.5 90.6 90.7 90.7 90.8 90.9 91.0 91.0 91.1 91.2 91.3 91.3 91.4 91.5 91.5 91.6 91.7 91.8 91.8 91.9 92.0 92.1 92.1 92.2 92.3 92.3 92.4 92.5 92.6 92.6 92.7 92.8 92.9 92.9 93.0 93.1 93.1 93.2 93.3 93.4 93.4 93.5 93.6 93.7 93.7 93.8 93.9 94.0 94.0 94.1 94.2 94.2 94.3 94.4 94.5 94.5 94.6 94.7 94.8 94.8 94.9 95.0 95.0 95.1 95.2 95.3 95.3 95.4 95.5 95.6 95.6 95.7 95.8 95.8 95.9 96.0 96.1 96.1 96.2 96.3 96.4 96.4 96.5 96.6 96.6 96.7 96.8 96.9 96.9 97.0 97.1 97.2 97.2 97.3 97.4 97.4 97.5 97.6 97.7 97.7 97.8 97.9 98.0 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.5 98.6 98.7 98.8 98.8 98.9 99.0 99.1 99.1 99.2 99.3 99.3 99.4 99.5 99.6 99.6 99.7 99.8 99.9 99.9 -found 58 predictions from path traversal Error with prediction: snap lend_intergenic: 10526, rend_intergenic: 5830 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22262, rend_intergenic: 10815 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27475, rend_intergenic: 22756 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49161, rend_intergenic: 47836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53750, rend_intergenic: 51929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64872, rend_intergenic: 63688 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66780, rend_intergenic: 65477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71665, rend_intergenic: 69411 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84880, rend_intergenic: 79491 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91122, rend_intergenic: 85165 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104725, rend_intergenic: 91260 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109601, rend_intergenic: 105157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138400, rend_intergenic: 109747 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140165, rend_intergenic: 138415 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142456, rend_intergenic: 140197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 150887, rend_intergenic: 142993 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 189168, rend_intergenic: 152791 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191383, rend_intergenic: 189170 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 206037, rend_intergenic: 203465 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208461, rend_intergenic: 206776 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219454, rend_intergenic: 212136 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 225735, rend_intergenic: 220340 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232111, rend_intergenic: 228919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241752, rend_intergenic: 232439 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 281577, rend_intergenic: 247220 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 296338, rend_intergenic: 282956 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 299823, rend_intergenic: 297529 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 301768, rend_intergenic: 300312 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 314407, rend_intergenic: 308858 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 317377, rend_intergenic: 314457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 320509, rend_intergenic: 318998 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 322330, rend_intergenic: 320568 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 328269, rend_intergenic: 325216 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 35 predictions persist after filtering for low support