-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_1995409-2061813

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_22170-T1
Valid prediction for snap_scaffold_9-snap.436-T1
Valid prediction for snap_scaffold_9-snap.433-T1
Valid prediction for snap_scaffold_9-snap.443-T1
Valid prediction for snap_scaffold_9-snap.440-T1
Valid prediction for GeneMark_model.37841_t
Valid prediction for Augustus_model.g14834.t1
Valid prediction for GlimmerHMM_glimmerT_22173-T1
Valid prediction for snap_scaffold_9-snap.445-T1
Valid prediction for Augustus_model.g14840.t1
Valid prediction for snap_scaffold_9-snap.432-T1
Valid prediction for Augustus_model.g14835.t1
Valid prediction for GeneMark_model.37850_t
Valid prediction for GeneMark_model.37846_t
Valid prediction for GlimmerHMM_glimmerT_22167-T1
Valid prediction for Augustus_model.g14838.t1
Valid prediction for snap_scaffold_9-snap.431-T1
Valid prediction for GeneMark_model.37848_t
Valid prediction for GeneMark_model.37845_t
Valid prediction for Augustus_model.g14843.t1
Valid prediction for GeneMark_model.37843_t
Valid prediction for snap_scaffold_9-snap.438-T1
Valid prediction for GeneMark_model.37853_t
Valid prediction for GeneMark_model.37847_t
Valid prediction for GeneMark_model.37851_t
Valid prediction for GeneMark_model.37839_t
Valid prediction for GeneMark_model.37855_t
Valid prediction for Augustus_model.g14831.t1
Valid prediction for GlimmerHMM_glimmerT_22175-T1
Valid prediction for snap_scaffold_9-snap.437-T1
Valid prediction for Augustus_model.g14829.t1
Valid prediction for snap_scaffold_9-snap.429-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_22171-T1
Valid prediction for snap_scaffold_9-snap.441-T1
Valid prediction for GeneMark_model.37844_t
Valid prediction for GlimmerHMM_glimmerT_22166-T1
Valid prediction for Augustus_model.g14837.t1
Valid prediction for snap_scaffold_9-snap.444-T1
Valid prediction for GlimmerHMM_glimmerT_22174-T1
Valid prediction for GeneMark_model.37840_t
Valid prediction for Augustus_model.g14841.t1
Valid prediction for GeneMark_model.37842_t
Valid prediction for Augustus_model.g14828.t1
Valid prediction for snap_scaffold_9-snap.442-T1
Valid prediction for Augustus_model.g14836.t1
Valid prediction for snap_scaffold_9-snap.439-T1
Valid prediction for GeneMark_model.37852_t
Valid prediction for Augustus_model.g14830.t1
Valid prediction for Augustus_model.g14833.t1
Valid prediction for Augustus_model.g14832.t1
Valid prediction for GeneMark_model.37854_t
Valid prediction for snap_scaffold_9-snap.428-T1
Valid prediction for snap_scaffold_9-snap.434-T1
Valid prediction for GlimmerHMM_glimmerT_22169-T1
Valid prediction for GlimmerHMM_glimmerT_22172-T1
Valid prediction for Augustus_model.g14842.t1
Valid prediction for pasa_asmbl_54826.p1
Valid prediction for Augustus_model.g14839.t1
Valid prediction for GlimmerHMM_glimmerT_22168-T1
Valid prediction for snap_scaffold_9-snap.435-T1
Valid prediction for snap_scaffold_9-snap.430-T1
Valid prediction for GeneMark_model.37849_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7318, rend_intergenic: 5649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13730, rend_intergenic: 10630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55884, rend_intergenic: 54116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 66405
-exon list size: 192


building trellis

0.5    
1.0    
1.5    
2.1    
2.6    
3.1    
3.6    
4.1    
4.6    
5.2    
5.7    
6.2    
6.7    
7.2    
7.7    
8.2    
8.8    
9.3    
9.8    
10.3    
10.8    
11.3    
11.9    
12.4    
12.9    
13.4    
13.9    
14.4    
14.9    
15.5    
16.0    
16.5    
17.0    
17.5    
18.0    
18.6    
19.1    
19.6    
20.1    
20.6    
21.1    
21.6    
22.2    
22.7    
23.2    
23.7    
24.2    
24.7    
25.3    
25.8    
26.3    
26.8    
27.3    
27.8    
28.4    
28.9    
29.4    
29.9    
30.4    
30.9    
31.4    
32.0    
32.5    
33.0    
33.5    
34.0    
34.5    
35.1    
35.6    
36.1    
36.6    
37.1    
37.6    
38.1    
38.7    
39.2    
39.7    
40.2    
40.7    
41.2    
41.8    
42.3    
42.8    
43.3    
43.8    
44.3    
44.8    
45.4    
45.9    
46.4    
46.9    
47.4    
47.9    
48.5    
49.0    
49.5    
50.0    
50.5    
51.0    
51.5    
52.1    
52.6    
53.1    
53.6    
54.1    
54.6    
55.2    
55.7    
56.2    
56.7    
57.2    
57.7    
58.2    
58.8    
59.3    
59.8    
60.3    
60.8    
61.3    
61.9    
62.4    
62.9    
63.4    
63.9    
64.4    
64.9    
65.5    
66.0    
66.5    
67.0    
67.5    
68.0    
68.6    
69.1    
69.6    
70.1    
70.6    
71.1    
71.6    
72.2    
72.7    
73.2    
73.7    
74.2    
74.7    
75.3    
75.8    
76.3    
76.8    
77.3    
77.8    
78.4    
78.9    
79.4    
79.9    
80.4    
80.9    
81.4    
82.0    
82.5    
83.0    
83.5    
84.0    
84.5    
85.1    
85.6    
86.1    
86.6    
87.1    
87.6    
88.1    
88.7    
89.2    
89.7    
90.2    
90.7    
91.2    
91.8    
92.3    
92.8    
93.3    
93.8    
94.3    
94.8    
95.4    
95.9    
96.4    
96.9    
97.4    
97.9    
98.5    
99.0    
99.5    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 7318, rend_intergenic: 5649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13730, rend_intergenic: 10630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55884, rend_intergenic: 54116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support