-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_18494624-18536572

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_24403-T1
Valid prediction for GeneMark_model.41784_t
Valid prediction for GeneMark_model.41781_t
Valid prediction for snap_scaffold_9-snap.3714-T1
Valid prediction for GeneMark_model.41780_t
Valid prediction for Augustus_model.g16332.t1
Valid prediction for GlimmerHMM_glimmerT_24402-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.3715-T1
Valid prediction for GlimmerHMM_glimmerT_24404-T1
Valid prediction for GlimmerHMM_glimmerT_24407-T1
Valid prediction for snap_scaffold_9-snap.3718-T1
Valid prediction for snap_scaffold_9-snap.3720-T1
Valid prediction for GeneMark_model.41788_t
Valid prediction for snap_scaffold_9-snap.3719-T1
Valid prediction for GeneMark_model.41786_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_24408-T1
Valid prediction for GeneMark_model.41785_t
Valid prediction for GeneMark_model.41787_t
Valid prediction for snap_scaffold_9-snap.3717-T1
Valid prediction for GeneMark_model.41779_t
Couldn't classify 33586, 34554
Sorry, prediction pasa_asmbl_55679.p1 fails validation.
(CAC)	 AC	33586-34554	AT	GAA
Valid prediction for GlimmerHMM_glimmerT_24406-T1
Valid prediction for GlimmerHMM_glimmerT_24400-T1
Valid prediction for GeneMark_model.41783_t
Valid prediction for snap_scaffold_9-snap.3712-T1
Valid prediction for GlimmerHMM_glimmerT_24401-T1
Valid prediction for GeneMark_model.41782_t
Valid prediction for GlimmerHMM_glimmerT_24405-T1
Valid prediction for snap_scaffold_9-snap.3713-T1
Valid prediction for snap_scaffold_9-snap.3716-T1
Valid prediction for Augustus_model.g16331.t1
Valid prediction for snap_scaffold_9-snap.3721-T1
Couldn't classify 657, 767
Sorry, prediction GeneMark_model.41789_t fails validation.
(GAG)	 AG	657-767	GT	CTG
(AAC)	 AG	1365-1418	GT	GAG
(AAC)	 AG	1462-1485	GT	GAG
(AGG)	 AG	1507-1551	GT	GAG
(AGA)	 AG	1595-1689	GT	TGG
(AGG)	 AG	1836-1964	GT	AGG
(CAG)	 AG	1998-2467	CG	GAC
-recovered GeneMark_model.41789_t, terminal, 1998, 2467
-recovered GeneMark_model.41789_t, internal, 657, 767
-recovered GeneMark_model.41789_t, internal, 1365, 1418
-recovered GeneMark_model.41789_t, internal, 1462, 1485
-recovered GeneMark_model.41789_t, internal, 1507, 1551
-recovered GeneMark_model.41789_t, internal, 1595, 1689
-recovered GeneMark_model.41789_t, internal, 1836, 1964

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 40683, rend_intergenic: 38295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 41949
-exon list size: 122


building trellis

0.8    
1.6    
2.4    
3.2    
4.0    
4.8    
5.6    
6.5    
7.3    
8.1    
8.9    
9.7    
10.5    
11.3    
12.1    
12.9    
13.7    
14.5    
15.3    
16.1    
16.9    
17.7    
18.5    
19.4    
20.2    
21.0    
21.8    
22.6    
23.4    
24.2    
25.0    
25.8    
26.6    
27.4    
28.2    
29.0    
29.8    
30.6    
31.5    
32.3    
33.1    
33.9    
34.7    
35.5    
36.3    
37.1    
37.9    
38.7    
39.5    
40.3    
41.1    
41.9    
42.7    
43.5    
44.4    
45.2    
46.0    
46.8    
47.6    
48.4    
49.2    
50.0    
50.8    
51.6    
52.4    
53.2    
54.0    
54.8    
55.6    
56.5    
57.3    
58.1    
58.9    
59.7    
60.5    
61.3    
62.1    
62.9    
63.7    
64.5    
65.3    
66.1    
66.9    
67.7    
68.5    
69.4    
70.2    
71.0    
71.8    
72.6    
73.4    
74.2    
75.0    
75.8    
76.6    
77.4    
78.2    
79.0    
79.8    
80.6    
81.5    
82.3    
83.1    
83.9    
84.7    
85.5    
86.3    
87.1    
87.9    
88.7    
89.5    
90.3    
91.1    
91.9    
92.7    
93.5    
94.4    
95.2    
96.0    
96.8    
97.6    
98.4    
99.2    
-found 14 predictions from path traversal
Error with prediction: snap lend_intergenic: 40683, rend_intergenic: 38295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support