-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_17924439-18118097

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.3621-T1
Valid prediction for GlimmerHMM_glimmerT_24322-T1
Valid prediction for snap_scaffold_9-snap.3633-T1
Valid prediction for GeneMark_model.41692_t
Valid prediction for snap_scaffold_9-snap.3619-T1
Valid prediction for GeneMark_model.41700_t
Valid prediction for GeneMark_model.41695_t
Valid prediction for GlimmerHMM_glimmerT_24316-T1
Valid prediction for GlimmerHMM_glimmerT_24332-T1
Valid prediction for GeneMark_model.41683_t
Valid prediction for GeneMark_model.41671_t
Valid prediction for GlimmerHMM_glimmerT_24334-T1
Valid prediction for GeneMark_model.41662_t
Valid prediction for GlimmerHMM_glimmerT_24339-T1
Valid prediction for Augustus_model.g16291.t1
Valid prediction for GeneMark_model.41678_t
Valid prediction for GlimmerHMM_glimmerT_24329-T1
Valid prediction for Augustus_model.g16288.t1
Valid prediction for GeneMark_model.41672_t
Valid prediction for snap_scaffold_9-snap.3634-T1
Valid prediction for GeneMark_model.41681_t
Valid prediction for Augustus_model.g16290.t1
Valid prediction for Augustus_model.g16289.t1
Valid prediction for snap_scaffold_9-snap.3637-T1
Valid prediction for snap_scaffold_9-snap.3632-T1
Valid prediction for GeneMark_model.41673_t
Valid prediction for GlimmerHMM_glimmerT_24320-T1
Valid prediction for GeneMark_model.41675_t
Valid prediction for snap_scaffold_9-snap.3641-T1
Valid prediction for GeneMark_model.41682_t
Valid prediction for GlimmerHMM_glimmerT_24336-T1
Valid prediction for snap_scaffold_9-snap.3623-T1
Valid prediction for snap_scaffold_9-snap.3639-T1
Valid prediction for GeneMark_model.41679_t
Valid prediction for Augustus_model.g16285.t1
Valid prediction for snap_scaffold_9-snap.3636-T1
Valid prediction for snap_scaffold_9-snap.3629-T1
Valid prediction for GeneMark_model.41669_t
Valid prediction for GeneMark_model.41689_t
Valid prediction for snap_scaffold_9-snap.3627-T1
Valid prediction for GlimmerHMM_glimmerT_24331-T1
Valid prediction for GlimmerHMM_glimmerT_24325-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_24317-T1
Valid prediction for GlimmerHMM_glimmerT_24335-T1
Valid prediction for GlimmerHMM_glimmerT_24338-T1
Valid prediction for snap_scaffold_9-snap.3613-T1
Valid prediction for snap_scaffold_9-snap.3635-T1
Valid prediction for GeneMark_model.41694_t
Valid prediction for snap_scaffold_9-snap.3638-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.3626-T1
Valid prediction for GlimmerHMM_glimmerT_24337-T1
Valid prediction for GeneMark_model.41670_t
Valid prediction for GeneMark_model.41685_t
Valid prediction for GeneMark_model.41697_t
Valid prediction for GlimmerHMM_glimmerT_24324-T1
Valid prediction for GlimmerHMM_glimmerT_24327-T1
Valid prediction for GlimmerHMM_glimmerT_24318-T1
Valid prediction for GlimmerHMM_glimmerT_24340-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.41680_t
Valid prediction for GeneMark_model.41664_t
Valid prediction for Augustus_model.g16284.t1
Valid prediction for GlimmerHMM_glimmerT_24330-T1
Valid prediction for GlimmerHMM_glimmerT_24315-T1
Valid prediction for GeneMark_model.41668_t
Valid prediction for snap_scaffold_9-snap.3631-T1
Valid prediction for Augustus_model.g16286.t1
Valid prediction for GeneMark_model.41663_t
Valid prediction for GlimmerHMM_glimmerT_24323-T1
Valid prediction for GeneMark_model.41674_t
Valid prediction for Augustus_model.g16287.t1
Valid prediction for GeneMark_model.41684_t
Valid prediction for GeneMark_model.41698_t
Valid prediction for GeneMark_model.41676_t
Valid prediction for GeneMark_model.41666_t
Valid prediction for snap_scaffold_9-snap.3622-T1
Valid prediction for GeneMark_model.41688_t
Valid prediction for GeneMark_model.41699_t
Valid prediction for snap_scaffold_9-snap.3612-T1
Valid prediction for GlimmerHMM_glimmerT_24333-T1
Valid prediction for GlimmerHMM_glimmerT_24319-T1
Valid prediction for GlimmerHMM_glimmerT_24321-T1
Valid prediction for snap_scaffold_9-snap.3617-T1
Valid prediction for snap_scaffold_9-snap.3616-T1
Valid prediction for GeneMark_model.41677_t
Valid prediction for GlimmerHMM_glimmerT_24328-T1
Valid prediction for GeneMark_model.41696_t
Valid prediction for snap_scaffold_9-snap.3620-T1
Valid prediction for GeneMark_model.41693_t
Valid prediction for snap_scaffold_9-snap.3610-T1
Valid prediction for GeneMark_model.41665_t
Valid prediction for snap_scaffold_9-snap.3630-T1
Valid prediction for snap_scaffold_9-snap.3628-T1
Valid prediction for GlimmerHMM_glimmerT_24326-T1
Valid prediction for GeneMark_model.41686_t
Valid prediction for snap_scaffold_9-snap.3611-T1
Valid prediction for snap_scaffold_9-snap.3615-T1
Valid prediction for snap_scaffold_9-snap.3618-T1
Valid prediction for GeneMark_model.41687_t
Valid prediction for GeneMark_model.41690_t
Valid prediction for snap_scaffold_9-snap.3624-T1
Valid prediction for snap_scaffold_9-snap.3625-T1
Valid prediction for snap_scaffold_9-snap.3640-T1
Valid prediction for snap_scaffold_9-snap.3614-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16967, rend_intergenic: 15870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52902, rend_intergenic: 48706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70068, rend_intergenic: 61051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83183, rend_intergenic: 80469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93460, rend_intergenic: 86415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103105, rend_intergenic: 95443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125330, rend_intergenic: 111775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189683, rend_intergenic: 185150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 193659
-exon list size: 441


building trellis

0.2    
0.5    
0.7    
0.9    
1.1    
1.4    
1.6    
1.8    
2.0    
2.3    
2.5    
2.7    
2.9    
3.2    
3.4    
3.6    
3.8    
4.1    
4.3    
4.5    
4.7    
5.0    
5.2    
5.4    
5.6    
5.9    
6.1    
6.3    
6.5    
6.8    
7.0    
7.2    
7.4    
7.7    
7.9    
8.1    
8.4    
8.6    
8.8    
9.0    
9.3    
9.5    
9.7    
9.9    
10.2    
10.4    
10.6    
10.8    
11.1    
11.3    
11.5    
11.7    
12.0    
12.2    
12.4    
12.6    
12.9    
13.1    
13.3    
13.5    
13.8    
14.0    
14.2    
14.4    
14.7    
14.9    
15.1    
15.3    
15.6    
15.8    
16.0    
16.3    
16.5    
16.7    
16.9    
17.2    
17.4    
17.6    
17.8    
18.1    
18.3    
18.5    
18.7    
19.0    
19.2    
19.4    
19.6    
19.9    
20.1    
20.3    
20.5    
20.8    
21.0    
21.2    
21.4    
21.7    
21.9    
22.1    
22.3    
22.6    
22.8    
23.0    
23.3    
23.5    
23.7    
23.9    
24.2    
24.4    
24.6    
24.8    
25.1    
25.3    
25.5    
25.7    
26.0    
26.2    
26.4    
26.6    
26.9    
27.1    
27.3    
27.5    
27.8    
28.0    
28.2    
28.4    
28.7    
28.9    
29.1    
29.3    
29.6    
29.8    
30.0    
30.2    
30.5    
30.7    
30.9    
31.2    
31.4    
31.6    
31.8    
32.1    
32.3    
32.5    
32.7    
33.0    
33.2    
33.4    
33.6    
33.9    
34.1    
34.3    
34.5    
34.8    
35.0    
35.2    
35.4    
35.7    
35.9    
36.1    
36.3    
36.6    
36.8    
37.0    
37.2    
37.5    
37.7    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.6    
40.9    
41.1    
41.3    
41.5    
41.8    
42.0    
42.2    
42.4    
42.7    
42.9    
43.1    
43.3    
43.6    
43.8    
44.0    
44.2    
44.5    
44.7    
44.9    
45.1    
45.4    
45.6    
45.8    
46.0    
46.3    
46.5    
46.7    
47.0    
47.2    
47.4    
47.6    
47.9    
48.1    
48.3    
48.5    
48.8    
49.0    
49.2    
49.4    
49.7    
49.9    
50.1    
50.3    
50.6    
50.8    
51.0    
51.2    
51.5    
51.7    
51.9    
52.1    
52.4    
52.6    
52.8    
53.0    
53.3    
53.5    
53.7    
54.0    
54.2    
54.4    
54.6    
54.9    
55.1    
55.3    
55.5    
55.8    
56.0    
56.2    
56.4    
56.7    
56.9    
57.1    
57.3    
57.6    
57.8    
58.0    
58.2    
58.5    
58.7    
58.9    
59.1    
59.4    
59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
60.9    
61.2    
61.4    
61.6    
61.9    
62.1    
62.3    
62.5    
62.8    
63.0    
63.2    
63.4    
63.7    
63.9    
64.1    
64.3    
64.6    
64.8    
65.0    
65.2    
65.5    
65.7    
65.9    
66.1    
66.4    
66.6    
66.8    
67.0    
67.3    
67.5    
67.7    
67.9    
68.2    
68.4    
68.6    
68.8    
69.1    
69.3    
69.5    
69.8    
70.0    
70.2    
70.4    
70.7    
70.9    
71.1    
71.3    
71.6    
71.8    
72.0    
72.2    
72.5    
72.7    
72.9    
73.1    
73.4    
73.6    
73.8    
74.0    
74.3    
74.5    
74.7    
74.9    
75.2    
75.4    
75.6    
75.8    
76.1    
76.3    
76.5    
76.7    
77.0    
77.2    
77.4    
77.7    
77.9    
78.1    
78.3    
78.6    
78.8    
79.0    
79.2    
79.5    
79.7    
79.9    
80.1    
80.4    
80.6    
80.8    
81.0    
81.3    
81.5    
81.7    
81.9    
82.2    
82.4    
82.6    
82.8    
83.1    
83.3    
83.5    
83.7    
84.0    
84.2    
84.4    
84.7    
84.9    
85.1    
85.3    
85.6    
85.8    
86.0    
86.2    
86.5    
86.7    
86.9    
87.1    
87.4    
87.6    
87.8    
88.0    
88.3    
88.5    
88.7    
88.9    
89.2    
89.4    
89.6    
89.8    
90.1    
90.3    
90.5    
90.7    
91.0    
91.2    
91.4    
91.6    
91.9    
92.1    
92.3    
92.6    
92.8    
93.0    
93.2    
93.5    
93.7    
93.9    
94.1    
94.4    
94.6    
94.8    
95.0    
95.3    
95.5    
95.7    
95.9    
96.2    
96.4    
96.6    
96.8    
97.1    
97.3    
97.5    
97.7    
98.0    
98.2    
98.4    
98.6    
98.9    
99.1    
99.3    
99.5    
99.8    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 16967, rend_intergenic: 15870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52902, rend_intergenic: 48706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70068, rend_intergenic: 61051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83183, rend_intergenic: 80469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93460, rend_intergenic: 86415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103105, rend_intergenic: 95443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125330, rend_intergenic: 111775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189683, rend_intergenic: 185150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support