-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_17062593-17240170

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.3470-T1
Valid prediction for GlimmerHMM_glimmerT_24223-T1
Valid prediction for GlimmerHMM_glimmerT_24210-T1
Valid prediction for GlimmerHMM_glimmerT_24220-T1
Valid prediction for GeneMark_model.41543_t
Valid prediction for snap_scaffold_9-snap.3471-T1
Valid prediction for GlimmerHMM_glimmerT_24212-T1
Valid prediction for snap_scaffold_9-snap.3489-T1
Valid prediction for GlimmerHMM_glimmerT_24211-T1
Valid prediction for GeneMark_model.41535_t
Valid prediction for GlimmerHMM_glimmerT_24207-T1
Valid prediction for Augustus_model.g16217.t1
Valid prediction for GeneMark_model.41547_t
Valid prediction for GeneMark_model.41532_t
Valid prediction for GlimmerHMM_glimmerT_24209-T1
Valid prediction for snap_scaffold_9-snap.3472-T1
Valid prediction for GeneMark_model.41538_t
Valid prediction for GlimmerHMM_glimmerT_24208-T1
Valid prediction for GlimmerHMM_glimmerT_24221-T1
Valid prediction for GeneMark_model.41541_t
Valid prediction for snap_scaffold_9-snap.3488-T1
Valid prediction for GlimmerHMM_glimmerT_24215-T1
Valid prediction for snap_scaffold_9-snap.3485-T1
Valid prediction for GeneMark_model.41533_t
Valid prediction for GlimmerHMM_glimmerT_24214-T1
Valid prediction for snap_scaffold_9-snap.3476-T1
Valid prediction for GlimmerHMM_glimmerT_24227-T1
Valid prediction for GlimmerHMM_glimmerT_24225-T1
Valid prediction for GlimmerHMM_glimmerT_24224-T1
Valid prediction for snap_scaffold_9-snap.3486-T1
Valid prediction for snap_scaffold_9-snap.3482-T1
Valid prediction for snap_scaffold_9-snap.3478-T1
Valid prediction for snap_scaffold_9-snap.3468-T1
Valid prediction for GlimmerHMM_glimmerT_24218-T1
Valid prediction for snap_scaffold_9-snap.3479-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g16216.t1
Valid prediction for snap_scaffold_9-snap.3473-T1
Valid prediction for snap_scaffold_9-snap.3487-T1
Valid prediction for snap_scaffold_9-snap.3483-T1
Valid prediction for GeneMark_model.41542_t
Valid prediction for GeneMark_model.41531_t
Valid prediction for GeneMark_model.41540_t
Valid prediction for snap_scaffold_9-snap.3490-T1
Valid prediction for GeneMark_model.41534_t
Valid prediction for snap_scaffold_9-snap.3481-T1
Valid prediction for GeneMark_model.41546_t
Valid prediction for GeneMark_model.41539_t
Valid prediction for GlimmerHMM_glimmerT_24226-T1
Valid prediction for GeneMark_model.41536_t
Valid prediction for snap_scaffold_9-snap.3474-T1
Valid prediction for snap_scaffold_9-snap.3475-T1
Valid prediction for snap_scaffold_9-snap.3469-T1
Valid prediction for GeneMark_model.41545_t
Valid prediction for GlimmerHMM_glimmerT_24213-T1
Valid prediction for snap_scaffold_9-snap.3477-T1
Valid prediction for snap_scaffold_9-snap.3484-T1
Valid prediction for GeneMark_model.41548_t
Valid prediction for snap_scaffold_9-snap.3480-T1
Valid prediction for GlimmerHMM_glimmerT_24219-T1
Valid prediction for Augustus_model.g16215.t1
Valid prediction for GlimmerHMM_glimmerT_24216-T1
Valid prediction for GlimmerHMM_glimmerT_24217-T1
Valid prediction for GeneMark_model.41544_t
Valid prediction for GlimmerHMM_glimmerT_24222-T1
Valid prediction for GeneMark_model.41549_t
Valid prediction for GeneMark_model.41537_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 44828, rend_intergenic: 43649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 177578
-exon list size: 228


building trellis

0.4    
0.9    
1.3    
1.7    
2.2    
2.6    
3.0    
3.5    
3.9    
4.3    
4.8    
5.2    
5.7    
6.1    
6.5    
7.0    
7.4    
7.8    
8.3    
8.7    
9.1    
9.6    
10.0    
10.4    
10.9    
11.3    
11.7    
12.2    
12.6    
13.0    
13.5    
13.9    
14.3    
14.8    
15.2    
15.7    
16.1    
16.5    
17.0    
17.4    
17.8    
18.3    
18.7    
19.1    
19.6    
20.0    
20.4    
20.9    
21.3    
21.7    
22.2    
22.6    
23.0    
23.5    
23.9    
24.3    
24.8    
25.2    
25.7    
26.1    
26.5    
27.0    
27.4    
27.8    
28.3    
28.7    
29.1    
29.6    
30.0    
30.4    
30.9    
31.3    
31.7    
32.2    
32.6    
33.0    
33.5    
33.9    
34.3    
34.8    
35.2    
35.7    
36.1    
36.5    
37.0    
37.4    
37.8    
38.3    
38.7    
39.1    
39.6    
40.0    
40.4    
40.9    
41.3    
41.7    
42.2    
42.6    
43.0    
43.5    
43.9    
44.3    
44.8    
45.2    
45.7    
46.1    
46.5    
47.0    
47.4    
47.8    
48.3    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.7    
52.2    
52.6    
53.0    
53.5    
53.9    
54.3    
54.8    
55.2    
55.7    
56.1    
56.5    
57.0    
57.4    
57.8    
58.3    
58.7    
59.1    
59.6    
60.0    
60.4    
60.9    
61.3    
61.7    
62.2    
62.6    
63.0    
63.5    
63.9    
64.3    
64.8    
65.2    
65.7    
66.1    
66.5    
67.0    
67.4    
67.8    
68.3    
68.7    
69.1    
69.6    
70.0    
70.4    
70.9    
71.3    
71.7    
72.2    
72.6    
73.0    
73.5    
73.9    
74.3    
74.8    
75.2    
75.7    
76.1    
76.5    
77.0    
77.4    
77.8    
78.3    
78.7    
79.1    
79.6    
80.0    
80.4    
80.9    
81.3    
81.7    
82.2    
82.6    
83.0    
83.5    
83.9    
84.3    
84.8    
85.2    
85.7    
86.1    
86.5    
87.0    
87.4    
87.8    
88.3    
88.7    
89.1    
89.6    
90.0    
90.4    
90.9    
91.3    
91.7    
92.2    
92.6    
93.0    
93.5    
93.9    
94.3    
94.8    
95.2    
95.7    
96.1    
96.5    
97.0    
97.4    
97.8    
98.3    
98.7    
99.1    
99.6    
-found 9 predictions from path traversal
Error with prediction: snap lend_intergenic: 44828, rend_intergenic: 43649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 20389
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12897
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12334
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11884
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 163202 - 177578
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support