-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_16866837-17065784

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.3447-T1
Valid prediction for GeneMark_model.41501_t
Valid prediction for GeneMark_model.41507_t
Valid prediction for snap_scaffold_9-snap.3464-T1
Valid prediction for pasa_asmbl_54737.p1
Valid prediction for snap_scaffold_9-snap.3458-T1
Valid prediction for Augustus_model.g16206.t1
Valid prediction for Augustus_model.g16210.t1
Valid prediction for GeneMark_model.41517_t
Valid prediction for GlimmerHMM_glimmerT_24197-T1
Valid prediction for HiQ_model.g16204.t1
Valid prediction for snap_scaffold_9-snap.3450-T1
Valid prediction for CodingQuarry_transcript_62289-T1
Valid prediction for snap_scaffold_9-snap.3444-T1
Valid prediction for GlimmerHMM_glimmerT_24200-T1
Valid prediction for snap_scaffold_9-snap.3457-T1
Valid prediction for GlimmerHMM_glimmerT_24192-T1
Valid prediction for GeneMark_model.41526_t
Valid prediction for snap_scaffold_9-snap.3456-T1
Valid prediction for GeneMark_model.41515_t
Valid prediction for snap_scaffold_9-snap.3446-T1
Valid prediction for snap_scaffold_9-snap.3455-T1
Valid prediction for GeneMark_model.41508_t
Valid prediction for GlimmerHMM_glimmerT_24188-T1
Valid prediction for GeneMark_model.41518_t
Valid prediction for GeneMark_model.41504_t
Valid prediction for GeneMark_model.41528_t
Valid prediction for GeneMark_model.41521_t
Valid prediction for GeneMark_model.41510_t
Valid prediction for GlimmerHMM_glimmerT_24203-T1
Valid prediction for GlimmerHMM_glimmerT_24199-T1
Valid prediction for GeneMark_model.41513_t
Valid prediction for snap_scaffold_9-snap.3454-T1
Valid prediction for GlimmerHMM_glimmerT_24189-T1
Valid prediction for GlimmerHMM_glimmerT_24193-T1
Valid prediction for GeneMark_model.41530_t
Valid prediction for Augustus_model.g16209.t1
Valid prediction for GlimmerHMM_glimmerT_24191-T1
Valid prediction for GeneMark_model.41522_t
Valid prediction for pasa_asmbl_54601.p1
Valid prediction for GlimmerHMM_glimmerT_24205-T1
Valid prediction for GlimmerHMM_glimmerT_24195-T1
Valid prediction for GeneMark_model.41514_t
Valid prediction for GeneMark_model.41512_t
Valid prediction for snap_scaffold_9-snap.3452-T1
Valid prediction for GlimmerHMM_glimmerT_24202-T1
Valid prediction for Augustus_model.g16205.t1
Valid prediction for GlimmerHMM_glimmerT_24194-T1
Valid prediction for GeneMark_model.41524_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g16212.t1
Valid prediction for GeneMark_model.41500_t
Valid prediction for snap_scaffold_9-snap.3465-T1
Valid prediction for GeneMark_model.41519_t
Valid prediction for GlimmerHMM_glimmerT_24190-T1
Valid prediction for GeneMark_model.41527_t
Valid prediction for GeneMark_model.41525_t
Valid prediction for snap_scaffold_9-snap.3463-T1
Valid prediction for snap_scaffold_9-snap.3467-T1
Valid prediction for Augustus_model.g16207.t1
Valid prediction for GeneMark_model.41523_t
Valid prediction for GeneMark_model.41505_t
Valid prediction for snap_scaffold_9-snap.3443-T1
Valid prediction for GlimmerHMM_glimmerT_24204-T1
Valid prediction for GeneMark_model.41503_t
Valid prediction for snap_scaffold_9-snap.3466-T1
Valid prediction for GeneMark_model.41502_t
Valid prediction for GeneMark_model.41529_t
Valid prediction for GlimmerHMM_glimmerT_24198-T1
Valid prediction for snap_scaffold_9-snap.3460-T1
Valid prediction for GeneMark_model.41520_t
Valid prediction for Augustus_model.g16213.t1
Valid prediction for GeneMark_model.41531_t
Valid prediction for snap_scaffold_9-snap.3462-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.3449-T1
Valid prediction for GeneMark_model.41509_t
Valid prediction for Augustus_model.g16208.t1
Valid prediction for snap_scaffold_9-snap.3459-T1
Valid prediction for snap_scaffold_9-snap.3445-T1
Valid prediction for Augustus_model.g16202.t1
Valid prediction for Augustus_model.g16214.t1
Valid prediction for Augustus_model.g16211.t1
Valid prediction for Augustus_model.g16203.t1
Valid prediction for snap_scaffold_9-snap.3461-T1
Valid prediction for snap_scaffold_9-snap.3442-T1
Valid prediction for GeneMark_model.41511_t
Valid prediction for GeneMark_model.41506_t
Valid prediction for GlimmerHMM_glimmerT_24196-T1
Valid prediction for GlimmerHMM_glimmerT_24201-T1
Valid prediction for snap_scaffold_9-snap.3451-T1
Valid prediction for snap_scaffold_9-snap.3448-T1
Valid prediction for snap_scaffold_9-snap.3453-T1
Valid prediction for GeneMark_model.41516_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12177, rend_intergenic: 9842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61241, rend_intergenic: 58481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 198948
-exon list size: 317


building trellis

0.3    
0.6    
0.9    
1.3    
1.6    
1.9    
2.2    
2.5    
2.8    
3.1    
3.4    
3.8    
4.1    
4.4    
4.7    
5.0    
5.3    
5.6    
6.0    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
10.0    
10.3    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.6    
17.9    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.9    
22.3    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.5    
24.8    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
27.0    
27.3    
27.6    
27.9    
28.2    
28.5    
28.8    
29.2    
29.5    
29.8    
30.1    
30.4    
30.7    
31.0    
31.3    
31.7    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.9    
34.2    
34.5    
34.8    
35.1    
35.4    
35.7    
36.1    
36.4    
36.7    
37.0    
37.3    
37.6    
37.9    
38.2    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.8    
41.1    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.3    
47.6    
48.0    
48.3    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.7    
52.0    
52.4    
52.7    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.9    
59.2    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.8    
62.1    
62.4    
62.7    
63.0    
63.3    
63.6    
63.9    
64.3    
64.6    
64.9    
65.2    
65.5    
65.8    
66.1    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.3    
68.7    
69.0    
69.3    
69.6    
69.9    
70.2    
70.5    
70.8    
71.2    
71.5    
71.8    
72.1    
72.4    
72.7    
73.0    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.2    
75.5    
75.9    
76.2    
76.5    
76.8    
77.1    
77.4    
77.7    
78.1    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.1    
82.4    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.7    
90.0    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
94.0    
94.4    
94.7    
95.0    
95.3    
95.6    
95.9    
96.2    
96.6    
96.9    
97.2    
97.5    
97.8    
98.1    
98.4    
98.7    
99.1    
99.4    
99.7    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 12177, rend_intergenic: 9842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61241, rend_intergenic: 58481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support