-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_16022599-16318648

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.3324-T1
Valid prediction for snap_scaffold_9-snap.3263-T1
Valid prediction for snap_scaffold_9-snap.3265-T1
Valid prediction for GlimmerHMM_glimmerT_24100-T1
Valid prediction for snap_scaffold_9-snap.3314-T1
Valid prediction for GeneMark_model.41299_t
Valid prediction for GeneMark_model.41310_t
Valid prediction for snap_scaffold_9-snap.3317-T1
Valid prediction for GeneMark_model.41380_t
Valid prediction for snap_scaffold_9-snap.3305-T1
Valid prediction for GlimmerHMM_glimmerT_24109-T1
Valid prediction for Augustus_model.g16139.t1
Valid prediction for GeneMark_model.41324_t
Valid prediction for GlimmerHMM_glimmerT_24108-T1
Valid prediction for snap_scaffold_9-snap.3288-T1
Valid prediction for GeneMark_model.41326_t
Valid prediction for snap_scaffold_9-snap.3295-T1
Valid prediction for snap_scaffold_9-snap.3326-T1
Valid prediction for snap_scaffold_9-snap.3301-T1
Valid prediction for GeneMark_model.41350_t
Valid prediction for snap_scaffold_9-snap.3275-T1
Valid prediction for snap_scaffold_9-snap.3331-T1
Valid prediction for snap_scaffold_9-snap.3312-T1
Valid prediction for GeneMark_model.41346_t
Valid prediction for GlimmerHMM_glimmerT_24110-T1
Valid prediction for GeneMark_model.41308_t
Valid prediction for GeneMark_model.41385_t
Valid prediction for GeneMark_model.41355_t
Valid prediction for Augustus_model.g16141.t1
Valid prediction for GeneMark_model.41369_t
Valid prediction for GeneMark_model.41394_t
Valid prediction for snap_scaffold_9-snap.3278-T1
Valid prediction for GeneMark_model.41361_t
Valid prediction for GeneMark_model.41327_t
Valid prediction for GeneMark_model.41312_t
Valid prediction for GlimmerHMM_glimmerT_24103-T1
Valid prediction for GeneMark_model.41344_t
Valid prediction for GeneMark_model.41383_t
Valid prediction for GlimmerHMM_glimmerT_24084-T1
Valid prediction for Augustus_model.g16124.t1
Valid prediction for snap_scaffold_9-snap.3267-T1
Valid prediction for GlimmerHMM_glimmerT_24082-T1
Valid prediction for snap_scaffold_9-snap.3289-T1
Valid prediction for GeneMark_model.41337_t
Valid prediction for GlimmerHMM_glimmerT_24106-T1
Valid prediction for GeneMark_model.41358_t
Valid prediction for Augustus_model.g16130.t1
Valid prediction for Augustus_model.g16138.t1
Valid prediction for Augustus_model.g16132.t1
Valid prediction for Augustus_model.g16126.t1
Valid prediction for GeneMark_model.41329_t
Valid prediction for GlimmerHMM_glimmerT_24079-T1
Valid prediction for snap_scaffold_9-snap.3325-T1
Valid prediction for GeneMark_model.41360_t
Valid prediction for snap_scaffold_9-snap.3327-T1
Valid prediction for GeneMark_model.41318_t
Valid prediction for snap_scaffold_9-snap.3319-T1
Valid prediction for GeneMark_model.41374_t
Valid prediction for Augustus_model.g16125.t1
Valid prediction for GeneMark_model.41381_t
Valid prediction for GlimmerHMM_glimmerT_24075-T1
Valid prediction for GlimmerHMM_glimmerT_24083-T1
Valid prediction for GeneMark_model.41314_t
Valid prediction for GlimmerHMM_glimmerT_24094-T1
Valid prediction for GlimmerHMM_glimmerT_24077-T1
Valid prediction for GeneMark_model.41307_t
Valid prediction for GlimmerHMM_glimmerT_24098-T1
Valid prediction for GeneMark_model.41331_t
Valid prediction for GeneMark_model.41316_t
Valid prediction for GeneMark_model.41372_t
Valid prediction for snap_scaffold_9-snap.3286-T1
Valid prediction for GeneMark_model.41305_t
Valid prediction for GeneMark_model.41339_t
Valid prediction for GeneMark_model.41320_t
Valid prediction for snap_scaffold_9-snap.3308-T1
Valid prediction for snap_scaffold_9-snap.3329-T1
Valid prediction for snap_scaffold_9-snap.3332-T1
Valid prediction for GeneMark_model.41342_t
Valid prediction for GeneMark_model.41340_t
Valid prediction for snap_scaffold_9-snap.3280-T1
Valid prediction for GeneMark_model.41301_t
Valid prediction for Augustus_model.g16136.t1
Valid prediction for snap_scaffold_9-snap.3283-T1
Valid prediction for snap_scaffold_9-snap.3328-T1
Valid prediction for GeneMark_model.41388_t
Valid prediction for snap_scaffold_9-snap.3303-T1
Valid prediction for GeneMark_model.41348_t
Valid prediction for GeneMark_model.41375_t
Valid prediction for GeneMark_model.41387_t
Valid prediction for GlimmerHMM_glimmerT_24105-T1
Valid prediction for GeneMark_model.41391_t
Valid prediction for snap_scaffold_9-snap.3270-T1
Valid prediction for GeneMark_model.41335_t
Valid prediction for snap_scaffold_9-snap.3298-T1
Valid prediction for snap_scaffold_9-snap.3322-T1
Valid prediction for GeneMark_model.41322_t
Valid prediction for GlimmerHMM_glimmerT_24088-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_9-snap.3273-T1
Valid prediction for snap_scaffold_9-snap.3300-T1
Valid prediction for GlimmerHMM_glimmerT_24093-T1
Valid prediction for snap_scaffold_9-snap.3287-T1
Valid prediction for GlimmerHMM_glimmerT_24086-T1
Valid prediction for GeneMark_model.41356_t
Valid prediction for snap_scaffold_9-snap.3285-T1
Valid prediction for GeneMark_model.41321_t
Valid prediction for GeneMark_model.41300_t
Valid prediction for GlimmerHMM_glimmerT_24095-T1
Valid prediction for GeneMark_model.41298_t
Valid prediction for GeneMark_model.41379_t
Valid prediction for GeneMark_model.41389_t
Valid prediction for GlimmerHMM_glimmerT_24097-T1
Valid prediction for snap_scaffold_9-snap.3279-T1
Valid prediction for Augustus_model.g16133.t1
Valid prediction for Augustus_model.g16128.t1
Valid prediction for GlimmerHMM_glimmerT_24099-T1
Valid prediction for GlimmerHMM_glimmerT_24090-T1
Valid prediction for GlimmerHMM_glimmerT_24087-T1
Valid prediction for GlimmerHMM_glimmerT_24091-T1
Valid prediction for GeneMark_model.41309_t
Valid prediction for GlimmerHMM_glimmerT_24081-T1
Valid prediction for GeneMark_model.41392_t
Valid prediction for snap_scaffold_9-snap.3294-T1
Valid prediction for GeneMark_model.41341_t
Valid prediction for GeneMark_model.41343_t
Valid prediction for GeneMark_model.41367_t
Valid prediction for GlimmerHMM_glimmerT_24104-T1
Valid prediction for snap_scaffold_9-snap.3297-T1
Valid prediction for GeneMark_model.41306_t
Valid prediction for snap_scaffold_9-snap.3310-T1
Valid prediction for GeneMark_model.41366_t
Valid prediction for Augustus_model.g16135.t1
Valid prediction for GeneMark_model.41317_t
Valid prediction for snap_scaffold_9-snap.3268-T1
Valid prediction for GeneMark_model.41354_t
Valid prediction for GeneMark_model.41357_t
Valid prediction for GeneMark_model.41338_t
Valid prediction for GeneMark_model.41330_t
Valid prediction for snap_scaffold_9-snap.3296-T1
Valid prediction for GeneMark_model.41315_t
Valid prediction for Augustus_model.g16134.t1
Valid prediction for GeneMark_model.41378_t
Valid prediction for snap_scaffold_9-snap.3302-T1
Valid prediction for GeneMark_model.41365_t
Valid prediction for snap_scaffold_9-snap.3315-T1
Valid prediction for GeneMark_model.41373_t
Valid prediction for snap_scaffold_9-snap.3272-T1
Valid prediction for snap_scaffold_9-snap.3271-T1
Valid prediction for snap_scaffold_9-snap.3291-T1
Valid prediction for snap_scaffold_9-snap.3290-T1
Valid prediction for GeneMark_model.41390_t
Valid prediction for GeneMark_model.41386_t
Valid prediction for snap_scaffold_9-snap.3321-T1
Valid prediction for HiQ_model.g16127.t1
Valid prediction for snap_scaffold_9-snap.3299-T1
Valid prediction for GeneMark_model.41384_t
Valid prediction for GlimmerHMM_glimmerT_24078-T1
Valid prediction for GeneMark_model.41323_t
Valid prediction for snap_scaffold_9-snap.3281-T1
Valid prediction for HiQ_model.g16137.t1
Valid prediction for GeneMark_model.41362_t
Valid prediction for GlimmerHMM_glimmerT_24101-T1
Valid prediction for GeneMark_model.41359_t
Valid prediction for GeneMark_model.41345_t
Valid prediction for snap_scaffold_9-snap.3309-T1
Valid prediction for snap_scaffold_9-snap.3323-T1
Valid prediction for snap_scaffold_9-snap.3330-T1
Valid prediction for GeneMark_model.41377_t
Valid prediction for GeneMark_model.41352_t
Valid prediction for GlimmerHMM_glimmerT_24089-T1
Valid prediction for snap_scaffold_9-snap.3307-T1
Valid prediction for snap_scaffold_9-snap.3292-T1
Valid prediction for GlimmerHMM_glimmerT_24085-T1
Valid prediction for CodingQuarry_transcript_62265-T1
Valid prediction for GeneMark_model.41370_t
Valid prediction for GeneMark_model.41347_t
Valid prediction for GlimmerHMM_glimmerT_24107-T1
Valid prediction for snap_scaffold_9-snap.3306-T1
Valid prediction for GeneMark_model.41319_t
Valid prediction for Augustus_model.g16129.t1
Valid prediction for GeneMark_model.41311_t
Valid prediction for GeneMark_model.41353_t
Valid prediction for snap_scaffold_9-snap.3313-T1
Valid prediction for snap_scaffold_9-snap.3282-T1
Valid prediction for snap_scaffold_9-snap.3266-T1
Couldn't classify 29476, 29578
Sorry, prediction pasa_asmbl_55529.p1 fails validation.
(GAC)	 CA	29476-29578	GT	CAG
(CCG)	 AG	30165-30220	GT	TTG
(ACC)	 AG	30350-30504	GT	AGG
(GAT)	 AG	30725-30797	GT	AGG
(ACT)	 AG	31064-31179	GT	AGG
(AAA)	 AG	31670-31820	GT	AGG
(GCA)	 AG	31914-32022	GT	CGG
(GAG)	 AG	32124-32194	GT	AGG
(GCA)	 AG	32287-32348	GT	ACG
(GGT)	 AG	32440-32491	GT	CGG
(GAG)	 AG	32598-32659	GT	GAG
(TGA)	 AG	32947-33151	GT	AGG
(CTT)	 AG	33242-33322	GT	TGG
(TGT)	 AG	33425-33517	GT	AGG
(GTG)	 AG	34033-34150	GT	AGG
(ACG)	 AG	34272-34424	GT	CGG
(ACT)	 AG	36439-36590	TT	GAT
-recovered pasa_asmbl_55529.p1, terminal, 36439, 36590
-recovered pasa_asmbl_55529.p1, internal, 30165, 30220
-recovered pasa_asmbl_55529.p1, internal, 30350, 30504
-recovered pasa_asmbl_55529.p1, internal, 30725, 30797
-recovered pasa_asmbl_55529.p1, internal, 31064, 31179
-recovered pasa_asmbl_55529.p1, internal, 31670, 31820
-recovered pasa_asmbl_55529.p1, internal, 31914, 32022
-recovered pasa_asmbl_55529.p1, internal, 32124, 32194
-recovered pasa_asmbl_55529.p1, internal, 32287, 32348
-recovered pasa_asmbl_55529.p1, internal, 32440, 32491
-recovered pasa_asmbl_55529.p1, internal, 32598, 32659
-recovered pasa_asmbl_55529.p1, internal, 32947, 33151
-recovered pasa_asmbl_55529.p1, internal, 33242, 33322
-recovered pasa_asmbl_55529.p1, internal, 33425, 33517
-recovered pasa_asmbl_55529.p1, internal, 34033, 34150
-recovered pasa_asmbl_55529.p1, internal, 34272, 34424
Valid prediction for snap_scaffold_9-snap.3320-T1
Valid prediction for snap_scaffold_9-snap.3293-T1
Valid prediction for GeneMark_model.41336_t
Valid prediction for GeneMark_model.41368_t
Valid prediction for GeneMark_model.41376_t
Valid prediction for snap_scaffold_9-snap.3277-T1
Valid prediction for GeneMark_model.41325_t
Valid prediction for GeneMark_model.41382_t
Valid prediction for Augustus_model.g16131.t1
Valid prediction for GeneMark_model.41333_t
Valid prediction for snap_scaffold_9-snap.3264-T1
Valid prediction for GeneMark_model.41334_t
Valid prediction for GlimmerHMM_glimmerT_24076-T1
Valid prediction for GlimmerHMM_glimmerT_24092-T1
Valid prediction for GeneMark_model.41351_t
Valid prediction for GeneMark_model.41393_t
Valid prediction for snap_scaffold_9-snap.3316-T1
Valid prediction for snap_scaffold_9-snap.3276-T1
Valid prediction for GlimmerHMM_glimmerT_24102-T1
Valid prediction for GeneMark_model.41363_t
Valid prediction for GeneMark_model.41371_t
Valid prediction for snap_scaffold_9-snap.3284-T1
Valid prediction for GeneMark_model.41304_t
Valid prediction for GeneMark_model.41302_t
Valid prediction for GeneMark_model.41349_t
Valid prediction for GeneMark_model.41303_t
Valid prediction for GlimmerHMM_glimmerT_24096-T1
Valid prediction for GeneMark_model.41332_t
Valid prediction for GeneMark_model.41313_t
Valid prediction for snap_scaffold_9-snap.3318-T1
Valid prediction for snap_scaffold_9-snap.3269-T1
Valid prediction for GlimmerHMM_glimmerT_24080-T1
Valid prediction for snap_scaffold_9-snap.3274-T1
Valid prediction for snap_scaffold_9-snap.3311-T1
Valid prediction for GeneMark_model.41328_t
Valid prediction for GeneMark_model.41364_t
Valid prediction for Augustus_model.g16140.t1
Valid prediction for snap_scaffold_9-snap.3304-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6675, rend_intergenic: 3952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14542, rend_intergenic: 10195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26179, rend_intergenic: 15204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26659, rend_intergenic: 26224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48532, rend_intergenic: 27744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62731, rend_intergenic: 49365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72097, rend_intergenic: 67392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80762, rend_intergenic: 75344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83632, rend_intergenic: 81499  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90660, rend_intergenic: 83745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95382, rend_intergenic: 92935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106332, rend_intergenic: 98220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109282, rend_intergenic: 107004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112786, rend_intergenic: 110021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119862, rend_intergenic: 113119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128797, rend_intergenic: 120051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141254, rend_intergenic: 136537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145154, rend_intergenic: 141571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157731, rend_intergenic: 154271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161141, rend_intergenic: 158460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164739, rend_intergenic: 161554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165908, rend_intergenic: 165385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177671, rend_intergenic: 168963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200096, rend_intergenic: 192689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209910, rend_intergenic: 207094  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225635, rend_intergenic: 219560  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237240, rend_intergenic: 233259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 255807, rend_intergenic: 255504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 267423, rend_intergenic: 259477  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281970, rend_intergenic: 277132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 289188, rend_intergenic: 282122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 296050
-exon list size: 1228


building trellis

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64.0    
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64.8    
64.9    
65.0    
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69.0    
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72.0    
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73.0    
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76.0    
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78.0    
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80.0    
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82.0    
82.0    
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99.3    
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99.8    
99.8    
99.9    
-found 64 predictions from path traversal
Error with prediction: snap lend_intergenic: 6675, rend_intergenic: 3952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14542, rend_intergenic: 10195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26179, rend_intergenic: 15204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26659, rend_intergenic: 26224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48532, rend_intergenic: 27744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62731, rend_intergenic: 49365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72097, rend_intergenic: 67392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80762, rend_intergenic: 75344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83632, rend_intergenic: 81499  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90660, rend_intergenic: 83745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95382, rend_intergenic: 92935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106332, rend_intergenic: 98220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109282, rend_intergenic: 107004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112786, rend_intergenic: 110021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119862, rend_intergenic: 113119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128797, rend_intergenic: 120051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141254, rend_intergenic: 136537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145154, rend_intergenic: 141571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157731, rend_intergenic: 154271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161141, rend_intergenic: 158460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164739, rend_intergenic: 161554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165908, rend_intergenic: 165385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177671, rend_intergenic: 168963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200096, rend_intergenic: 192689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209910, rend_intergenic: 207094  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225635, rend_intergenic: 219560  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237240, rend_intergenic: 233259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 255807, rend_intergenic: 255504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 267423, rend_intergenic: 259477  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281970, rend_intergenic: 277132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 289188, rend_intergenic: 282122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10687
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support