-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_14679143-14866535

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_23888-T1
Valid prediction for GeneMark_model.41010_t
Valid prediction for pasa_asmbl_54513.p1
Valid prediction for GlimmerHMM_glimmerT_23894-T1
Valid prediction for GeneMark_model.41001_t
Valid prediction for snap_scaffold_9-snap.3022-T1
Valid prediction for GlimmerHMM_glimmerT_23884-T1
Valid prediction for snap_scaffold_9-snap.3010-T1
Valid prediction for snap_scaffold_9-snap.3007-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.40981_t
Valid prediction for snap_scaffold_9-snap.3009-T1
Valid prediction for GeneMark_model.40974_t
Valid prediction for snap_scaffold_9-snap.3001-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.40970_t
Couldn't classify 7642, 7756
Sorry, prediction pasa_asmbl_54655.p1 fails validation.
(GAT)	 CA	7642-7756	GT	AGG
(ATG)	 AG	8147-8266	GT	AGG
(ACG)	 AG	8538-8657	GT	GGG
(ATG)	 AG	8801-8920	GT	GGG
(ATG)	 AG	9112-9225	GT	AGG
(ACA)	 AG	9343-9462	GT	AGG
(ATG)	 AG	10684-10809	GT	AGG
(ACA)	 AG	11069-11194	GT	GGG
(ATG)	 AG	11791-11913	GT	GGG
(ACG)	 AG	12110-12241	GT	CGG
(ACA)	 AG	12822-12947	GT	GGG
(ATG)	 AG	13111-13251	GT	AGG
(GAC)	 AG	13521-13778	GT	TGG
(CTG)	 AG	13972-14043	GT	AGG
(ATG)	 AG	14129-14257	GT	AGG
(ATA)	 AG	14640-14783	GT	GGG
(ATG)	 AG	15000-15152	GT	AGG
(AGG)	 AG	15411-15726	GT	CTG
(ACC)	 AG	16040-16305	GT	GAG
(GGC)	 AG	16647-16796	GT	AGG
(ACA)	 AG	17134-17273	CC	AGC
-recovered pasa_asmbl_54655.p1, initial, 8147, 8266
-recovered pasa_asmbl_54655.p1, initial, 8801, 8920
-recovered pasa_asmbl_54655.p1, initial, 9112, 9225
add_exon() Sorry, pasa_asmbl_54655.p1 10684-10809-initial-1 is invalid.
-recovered pasa_asmbl_54655.p1, initial, 10684, 10809
-recovered pasa_asmbl_54655.p1, initial, 11791, 11913
-recovered pasa_asmbl_54655.p1, initial, 13111, 13251
add_exon() Sorry, pasa_asmbl_54655.p1 14129-14257-initial-1 is invalid.
-recovered pasa_asmbl_54655.p1, initial, 14129, 14257
add_exon() Sorry, pasa_asmbl_54655.p1 15000-15152-initial-1 is invalid.
-recovered pasa_asmbl_54655.p1, initial, 15000, 15152
add_exon() Sorry, pasa_asmbl_54655.p1 14129-14257-terminal-1 is invalid.
-recovered pasa_asmbl_54655.p1, terminal, 14129, 14257
-recovered pasa_asmbl_54655.p1, terminal, 17134, 17273
-recovered pasa_asmbl_54655.p1, internal, 8147, 8266
-recovered pasa_asmbl_54655.p1, internal, 8538, 8657
-recovered pasa_asmbl_54655.p1, internal, 8801, 8920
-recovered pasa_asmbl_54655.p1, internal, 9112, 9225
-recovered pasa_asmbl_54655.p1, internal, 9343, 9462
-recovered pasa_asmbl_54655.p1, internal, 10684, 10809
-recovered pasa_asmbl_54655.p1, internal, 11069, 11194
-recovered pasa_asmbl_54655.p1, internal, 11791, 11913
-recovered pasa_asmbl_54655.p1, internal, 12110, 12241
-recovered pasa_asmbl_54655.p1, internal, 12822, 12947
-recovered pasa_asmbl_54655.p1, internal, 13111, 13251
-recovered pasa_asmbl_54655.p1, internal, 13521, 13778
-recovered pasa_asmbl_54655.p1, internal, 13972, 14043
-recovered pasa_asmbl_54655.p1, internal, 14129, 14257
-recovered pasa_asmbl_54655.p1, internal, 14640, 14783
-recovered pasa_asmbl_54655.p1, internal, 15000, 15152
-recovered pasa_asmbl_54655.p1, internal, 15411, 15726
-recovered pasa_asmbl_54655.p1, internal, 16040, 16305
-recovered pasa_asmbl_54655.p1, internal, 16647, 16796
Couldn't classify 141942, 142093
Sorry, prediction pasa_asmbl_54518.p1 fails validation.
(GAG)	 AG	141942-142093	GT	AGG
(GTT)	 AG	142262-143588	GT	AGG
(GAG)	 AG	143819-143986	GG	GAG
-recovered pasa_asmbl_54518.p1, terminal, 143819, 143986
-recovered pasa_asmbl_54518.p1, internal, 141942, 142093
-recovered pasa_asmbl_54518.p1, internal, 142262, 143588
Valid prediction for CodingQuarry_transcript_62240-T1
Valid prediction for GeneMark_model.40991_t
Valid prediction for snap_scaffold_9-snap.3026-T1
Valid prediction for CodingQuarry_transcript_62241-T1
Valid prediction for snap_scaffold_9-snap.3020-T1
Valid prediction for Augustus_model.g16001.t1
Valid prediction for snap_scaffold_9-snap.3000-T1
Valid prediction for GeneMark_model.40979_t
Valid prediction for snap_scaffold_9-snap.2998-T1
Valid prediction for GeneMark_model.40985_t
Valid prediction for snap_scaffold_9-snap.2988-T1
Valid prediction for snap_scaffold_9-snap.3019-T1
Valid prediction for GeneMark_model.41008_t
Valid prediction for GeneMark_model.41006_t
Valid prediction for snap_scaffold_9-snap.2991-T1
Valid prediction for GlimmerHMM_glimmerT_23872-T1
Valid prediction for HiQ_model.g16007.t1
Valid prediction for GeneMark_model.40983_t
Valid prediction for Augustus_model.g16002.t1
Valid prediction for GeneMark_model.40993_t
Valid prediction for GeneMark_model.41012_t
Valid prediction for GlimmerHMM_glimmerT_23889-T1
Valid prediction for GlimmerHMM_glimmerT_23883-T1
Valid prediction for GlimmerHMM_glimmerT_23873-T1
Valid prediction for GeneMark_model.40989_t
Valid prediction for CodingQuarry_transcript_62239-T1
Valid prediction for GeneMark_model.40992_t
Valid prediction for snap_scaffold_9-snap.3025-T1
Valid prediction for Augustus_model.g15994.t1
Valid prediction for snap_scaffold_9-snap.3028-T1
Valid prediction for GeneMark_model.41004_t
Valid prediction for snap_scaffold_9-snap.3002-T1
Valid prediction for snap_scaffold_9-snap.3027-T1
Valid prediction for snap_scaffold_9-snap.2994-T1
Valid prediction for GeneMark_model.41002_t
Valid prediction for GeneMark_model.40995_t
Valid prediction for GeneMark_model.40976_t
Valid prediction for snap_scaffold_9-snap.3029-T1
Valid prediction for snap_scaffold_9-snap.3015-T1
Valid prediction for GeneMark_model.40978_t
Valid prediction for GlimmerHMM_glimmerT_23891-T1
Valid prediction for snap_scaffold_9-snap.3004-T1
Valid prediction for GeneMark_model.40973_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 78709, 78842
Sorry, prediction pasa_asmbl_55454.p1 fails validation.
(TCG)	 TC	78709-78842	GT	CGG
(GCT)	 AG	79510-79624	GT	GAG
(GAC)	 AG	79988-80116	CT	AGC
-recovered pasa_asmbl_55454.p1, terminal, 79988, 80116
-recovered pasa_asmbl_55454.p1, internal, 79510, 79624
Valid prediction for snap_scaffold_9-snap.3008-T1
Valid prediction for Augustus_model.g16005.t1
Valid prediction for snap_scaffold_9-snap.3031-T1
Valid prediction for GeneMark_model.40999_t
Valid prediction for GlimmerHMM_glimmerT_23879-T1
Valid prediction for GlimmerHMM_glimmerT_23886-T1
Couldn't classify 75500, 77441
Couldn't classify 78419, 78546
Sorry, prediction pasa_asmbl_55455.p1 fails validation.
(GCA)	 AA	75500-77441	GT	TGG
(CGC)	 AG	78419-78546	GA	GGG
Valid prediction for snap_scaffold_9-snap.2990-T1
Valid prediction for GlimmerHMM_glimmerT_23880-T1
Valid prediction for GeneMark_model.41003_t
Valid prediction for GeneMark_model.40988_t
Valid prediction for snap_scaffold_9-snap.2989-T1
Valid prediction for GlimmerHMM_glimmerT_23874-T1
Valid prediction for CodingQuarry_transcript_62245-T1
Valid prediction for snap_scaffold_9-snap.3016-T1
Valid prediction for snap_scaffold_9-snap.2992-T1
Valid prediction for GlimmerHMM_glimmerT_23875-T1
Valid prediction for GlimmerHMM_glimmerT_23890-T1
Valid prediction for Augustus_model.g15995.t1
Valid prediction for GeneMark_model.40998_t
Valid prediction for snap_scaffold_9-snap.3011-T1
Valid prediction for GlimmerHMM_glimmerT_23885-T1
Valid prediction for GeneMark_model.40982_t
Valid prediction for GeneMark_model.40977_t
Valid prediction for GeneMark_model.40990_t
Valid prediction for GeneMark_model.40987_t
Valid prediction for snap_scaffold_9-snap.3003-T1
Valid prediction for GeneMark_model.40996_t
Valid prediction for GeneMark_model.41011_t
Valid prediction for pasa_asmbl_55469.p1
Valid prediction for snap_scaffold_9-snap.3024-T1
Valid prediction for GeneMark_model.40997_t
Valid prediction for pasa_asmbl_55456.p1
Valid prediction for GeneMark_model.40984_t
Valid prediction for GeneMark_model.40971_t
Couldn't classify 155432, 155448
Couldn't classify 156551, 156641
Sorry, prediction pasa_asmbl_55449.p2 fails validation.
(TCC)	 TC	155432-155448	GT	AGG
(GGT)	 AG	155748-155932	GT	AGG
(CAC)	 AG	156258-156396	GT	AGG
(CCT)	 AG	156551-156641	TC	GCT
-recovered pasa_asmbl_55449.p2, internal, 155748, 155932
-recovered pasa_asmbl_55449.p2, internal, 156258, 156396
Valid prediction for snap_scaffold_9-snap.3021-T1
Valid prediction for CodingQuarry_transcript_62244-T1
Valid prediction for CodingQuarry_transcript_62242-T1
Valid prediction for GlimmerHMM_glimmerT_23877-T1
Couldn't classify 154688, 154763
Couldn't classify 155352, 155449
Sorry, prediction pasa_asmbl_55450.p1 fails validation.
(CAG)	 CG	154688-154763	GT	AGG
(TGT)	 AG	154981-155136	GT	AGG
(GTC)	 AG	155352-155449	TA	GGT
add_exon() Sorry, pasa_asmbl_55450.p1 154981-155136-terminal-1 is invalid.
-recovered pasa_asmbl_55450.p1, terminal, 154981, 155136
-recovered pasa_asmbl_55450.p1, internal, 154981, 155136
Valid prediction for HiQ_model.g16008.t1
Valid prediction for Augustus_model.g15999.t1
Valid prediction for snap_scaffold_9-snap.2995-T1
Valid prediction for GlimmerHMM_glimmerT_23893-T1
Valid prediction for GlimmerHMM_glimmerT_23882-T1
Valid prediction for Augustus_model.g16004.t1
Valid prediction for snap_scaffold_9-snap.2999-T1
Valid prediction for Augustus_model.g16003.t1
Valid prediction for Augustus_model.g15997.t1
Valid prediction for GlimmerHMM_glimmerT_23878-T1
Valid prediction for snap_scaffold_9-snap.3012-T1
Valid prediction for GeneMark_model.40980_t
Valid prediction for GeneMark_model.41009_t
Valid prediction for Augustus_model.g16010.t1
Valid prediction for snap_scaffold_9-snap.3023-T1
Valid prediction for GeneMark_model.41005_t
Valid prediction for GeneMark_model.41000_t
Couldn't classify 85660, 85900
Sorry, prediction pasa_asmbl_55452.p1 fails validation.
(CGG)	 AG	85660-85900	GT	GGG
(TTT)	 AG	87812-88047	CT	AGC
-recovered pasa_asmbl_55452.p1, terminal, 87812, 88047
-recovered pasa_asmbl_55452.p1, internal, 85660, 85900
Valid prediction for snap_scaffold_9-snap.3006-T1
Valid prediction for snap_scaffold_9-snap.2997-T1
Valid prediction for GlimmerHMM_glimmerT_23892-T1
Valid prediction for GlimmerHMM_glimmerT_23881-T1
Valid prediction for Augustus_model.g16006.t1
Couldn't classify 154593, 154609
Sorry, prediction pasa_asmbl_55451.p1 fails validation.
(ATG)	 GC	152881-152951	GT	AGG
(AGT)	 AG	153099-153289	GT	TGG
(GGG)	 AG	153492-153607	GT	AGG
(AAC)	 AG	153730-153817	GT	AGG
(ATG)	 AG	153956-154072	GT	AAG
(GCG)	 AG	154593-154609	AT	GGA
-recovered pasa_asmbl_55451.p1, initial, 152881, 152951
add_exon() Sorry, pasa_asmbl_55451.p1 153956-154072-initial-1 is invalid.
-recovered pasa_asmbl_55451.p1, initial, 153956, 154072
-recovered pasa_asmbl_55451.p1, terminal, 153730, 153817
-recovered pasa_asmbl_55451.p1, internal, 153099, 153289
-recovered pasa_asmbl_55451.p1, internal, 153492, 153607
-recovered pasa_asmbl_55451.p1, internal, 153730, 153817
-recovered pasa_asmbl_55451.p1, internal, 153956, 154072
Valid prediction for snap_scaffold_9-snap.3005-T1
Valid prediction for snap_scaffold_9-snap.3014-T1
Valid prediction for Augustus_model.g15998.t1
Valid prediction for snap_scaffold_9-snap.3017-T1
Valid prediction for snap_scaffold_9-snap.3018-T1
Valid prediction for snap_scaffold_9-snap.3013-T1
Valid prediction for GeneMark_model.40994_t
Valid prediction for GlimmerHMM_glimmerT_23887-T1
Valid prediction for GeneMark_model.41007_t
Valid prediction for GlimmerHMM_glimmerT_23876-T1
Valid prediction for Augustus_model.g15996.t1
Valid prediction for snap_scaffold_9-snap.3030-T1
Valid prediction for GeneMark_model.40975_t
Valid prediction for Augustus_model.g16011.t1
Valid prediction for Augustus_model.g16000.t1
Valid prediction for GlimmerHMM_glimmerT_23895-T1
Valid prediction for GeneMark_model.40986_t
Valid prediction for snap_scaffold_9-snap.2993-T1
Valid prediction for snap_scaffold_9-snap.2996-T1
Valid prediction for Augustus_model.g16009.t1
Valid prediction for GeneMark_model.40972_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17273, rend_intergenic: 1896  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26839, rend_intergenic: 23760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35772, rend_intergenic: 30154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46992, rend_intergenic: 46187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51017, rend_intergenic: 47326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63394, rend_intergenic: 51138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64648, rend_intergenic: 63469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66813, rend_intergenic: 65151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72426, rend_intergenic: 67334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84081, rend_intergenic: 76799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88696, rend_intergenic: 85335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112590, rend_intergenic: 108630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137249, rend_intergenic: 132308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158149, rend_intergenic: 153699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177005, rend_intergenic: 159029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180239, rend_intergenic: 177975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 187393
-exon list size: 744


building trellis

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48.4    
48.5    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.5    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.5    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.1    
53.2    
53.4    
53.5    
53.6    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.6    
54.7    
54.8    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.4    
59.5    
59.7    
59.8    
59.9    
60.1    
60.2    
60.3    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.3    
61.4    
61.5    
61.7    
61.8    
61.9    
62.1    
62.2    
62.3    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.3    
63.4    
63.5    
63.7    
63.8    
63.9    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.9    
65.0    
65.1    
65.3    
65.4    
65.5    
65.7    
65.8    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.8    
66.9    
67.0    
67.2    
67.3    
67.4    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.4    
68.5    
68.6    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
72.0    
72.1    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.7    
76.8    
76.9    
77.1    
77.2    
77.3    
77.5    
77.6    
77.7    
77.9    
78.0    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.7    
87.8    
87.9    
88.1    
88.2    
88.3    
88.5    
88.6    
88.7    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.8    
96.9    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 17273, rend_intergenic: 1896  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26839, rend_intergenic: 23760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35772, rend_intergenic: 30154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46992, rend_intergenic: 46187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51017, rend_intergenic: 47326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63394, rend_intergenic: 51138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64648, rend_intergenic: 63469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66813, rend_intergenic: 65151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72426, rend_intergenic: 67334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84081, rend_intergenic: 76799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88696, rend_intergenic: 85335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112590, rend_intergenic: 108630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137249, rend_intergenic: 132308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158149, rend_intergenic: 153699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177005, rend_intergenic: 159029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180239, rend_intergenic: 177975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support