-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_13458041-13657404

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_23696-T1
Valid prediction for GeneMark_model.40604_t
Valid prediction for snap_scaffold_9-snap.2706-T1
Valid prediction for Augustus_model.g15905.t1
Valid prediction for GeneMark_model.40589_t
Valid prediction for GeneMark_model.40598_t
Valid prediction for snap_scaffold_9-snap.2721-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.2723-T1
Valid prediction for GeneMark_model.40602_t
Valid prediction for GlimmerHMM_glimmerT_23699-T1
Valid prediction for GlimmerHMM_glimmerT_23697-T1
Valid prediction for GlimmerHMM_glimmerT_23701-T1
Valid prediction for Augustus_model.g15898.t1
Couldn't classify 168062, 168244
Couldn't classify 173792, 173881
Sorry, prediction pasa_asmbl_54488.p1 fails validation.
(CGG)	 GC	168062-168244	GT	GGG
(CAG)	 AG	168417-168494	GT	TGG
(GCC)	 AG	168998-169123	GT	AGG
(GTG)	 AG	169336-169464	GT	CTG
(GTT)	 AG	169724-169858	GT	TGG
(GAC)	 AG	170100-170201	GT	AGG
(GTG)	 AG	170662-170772	GT	TGG
(CTC)	 AG	170923-171021	GT	CTG
(CAC)	 AG	171131-171173	GT	GGG
(ACC)	 AG	171325-171430	GT	AGG
(GCA)	 AG	172017-172154	GT	TTG
(GGT)	 AG	172443-172475	GT	TGG
(CAC)	 AG	173491-173605	GT	AGG
(AAG)	 AG	173792-173881	CG	GCC
-recovered pasa_asmbl_54488.p1, internal, 168417, 168494
-recovered pasa_asmbl_54488.p1, internal, 168998, 169123
-recovered pasa_asmbl_54488.p1, internal, 169336, 169464
-recovered pasa_asmbl_54488.p1, internal, 169724, 169858
-recovered pasa_asmbl_54488.p1, internal, 170100, 170201
-recovered pasa_asmbl_54488.p1, internal, 170662, 170772
-recovered pasa_asmbl_54488.p1, internal, 170923, 171021
-recovered pasa_asmbl_54488.p1, internal, 171131, 171173
-recovered pasa_asmbl_54488.p1, internal, 171325, 171430
-recovered pasa_asmbl_54488.p1, internal, 172017, 172154
-recovered pasa_asmbl_54488.p1, internal, 172443, 172475
-recovered pasa_asmbl_54488.p1, internal, 173491, 173605
Valid prediction for GeneMark_model.40615_t
Valid prediction for pasa_asmbl_54487.p1
Valid prediction for snap_scaffold_9-snap.2700-T1
Valid prediction for snap_scaffold_9-snap.2699-T1
Valid prediction for snap_scaffold_9-snap.2714-T1
Valid prediction for GeneMark_model.40584_t
Valid prediction for GlimmerHMM_glimmerT_23682-T1
Valid prediction for GlimmerHMM_glimmerT_23710-T1
Valid prediction for snap_scaffold_9-snap.2718-T1
Valid prediction for GeneMark_model.40591_t
Valid prediction for GeneMark_model.40593_t
Valid prediction for snap_scaffold_9-snap.2729-T1
Valid prediction for GlimmerHMM_glimmerT_23698-T1
Valid prediction for GeneMark_model.40606_t
Valid prediction for snap_scaffold_9-snap.2709-T1
Valid prediction for GeneMark_model.40626_t
Valid prediction for GlimmerHMM_glimmerT_23707-T1
Valid prediction for Augustus_model.g15901.t1
Valid prediction for GlimmerHMM_glimmerT_23694-T1
Valid prediction for GeneMark_model.40580_t
Valid prediction for GeneMark_model.40638_t
Valid prediction for GlimmerHMM_glimmerT_23692-T1
Valid prediction for GlimmerHMM_glimmerT_23714-T1
Valid prediction for snap_scaffold_9-snap.2712-T1
Valid prediction for GlimmerHMM_glimmerT_23700-T1
Valid prediction for snap_scaffold_9-snap.2696-T1
Valid prediction for GeneMark_model.40621_t
Valid prediction for snap_scaffold_9-snap.2690-T1
Valid prediction for snap_scaffold_9-snap.2695-T1
Valid prediction for GeneMark_model.40627_t
Valid prediction for snap_scaffold_9-snap.2703-T1
Valid prediction for GeneMark_model.40625_t
Valid prediction for snap_scaffold_9-snap.2716-T1
Valid prediction for snap_scaffold_9-snap.2692-T1
Valid prediction for GeneMark_model.40642_t
Valid prediction for snap_scaffold_9-snap.2707-T1
Couldn't classify 144921, 145058
Couldn't classify 146389, 146510
Sorry, prediction pasa_asmbl_54483.p1 fails validation.
(CAG)	 TG	144921-145058	GT	AGG
(AAA)	 AG	145222-145402	GT	AGG
(GTG)	 AG	146389-146510	TG	AGT
-recovered pasa_asmbl_54483.p1, internal, 145222, 145402
Valid prediction for GlimmerHMM_glimmerT_23685-T1
Valid prediction for snap_scaffold_9-snap.2726-T1
Valid prediction for HiQ_model.g15904.t1
Valid prediction for CodingQuarry_transcript_62231-T1
Valid prediction for GeneMark_model.40610_t
Valid prediction for Augustus_model.g15902.t1
Valid prediction for snap_scaffold_9-snap.2724-T1
Valid prediction for GeneMark_model.40600_t
Valid prediction for GeneMark_model.40586_t
Valid prediction for Augustus_model.g15908.t1
Valid prediction for GeneMark_model.40633_t
Valid prediction for Augustus_model.g15896.t1
Valid prediction for snap_scaffold_9-snap.2702-T1
Valid prediction for snap_scaffold_9-snap.2704-T1
Valid prediction for GeneMark_model.40635_t
Couldn't classify 174303, 174363
Sorry, prediction pasa_asmbl_54489.p1 fails validation.
(TCC)	 CC	174303-174363	GT	GGG
(CTC)	 AG	174621-174756	GT	AGG
(GGT)	 AG	175005-175040	GT	AGG
(GCT)	 AG	175157-175308	GT	CGG
(AGC)	 AG	175453-175599	GT	TGG
(CCT)	 AG	175706-175791	GT	GGG
(TTC)	 AG	176652-176777	GT	AGG
(GAG)	 AG	177076-177190	GT	AGG
(ACA)	 AG	178345-178445	GT	AGG
(AGA)	 AG	178570-178647	GT	AGG
(AAC)	 AG	178762-178837	GT	TGG
(AGT)	 AG	179021-179188	GT	AGG
(ACA)	 AG	179338-179425	GT	ACG
(GTG)	 AG	179529-179606	GT	GAG
(TGC)	 AG	179803-179897	GT	AGG
(ATA)	 AG	180108-180323	GT	ATG
(TGT)	 AG	180461-180697	GT	TGG
(CAG)	 AG	180776-180993	GT	AGG
(GAG)	 AG	181191-181266	GT	AGG
(ATA)	 AG	181371-181381	TT	AGT
-recovered pasa_asmbl_54489.p1, terminal, 179529, 179606
-recovered pasa_asmbl_54489.p1, terminal, 181371, 181381
-recovered pasa_asmbl_54489.p1, internal, 174621, 174756
-recovered pasa_asmbl_54489.p1, internal, 175005, 175040
-recovered pasa_asmbl_54489.p1, internal, 175157, 175308
-recovered pasa_asmbl_54489.p1, internal, 175453, 175599
-recovered pasa_asmbl_54489.p1, internal, 175706, 175791
-recovered pasa_asmbl_54489.p1, internal, 176652, 176777
-recovered pasa_asmbl_54489.p1, internal, 177076, 177190
-recovered pasa_asmbl_54489.p1, internal, 178345, 178445
-recovered pasa_asmbl_54489.p1, internal, 178570, 178647
-recovered pasa_asmbl_54489.p1, internal, 178762, 178837
-recovered pasa_asmbl_54489.p1, internal, 179021, 179188
-recovered pasa_asmbl_54489.p1, internal, 179338, 179425
-recovered pasa_asmbl_54489.p1, internal, 179529, 179606
-recovered pasa_asmbl_54489.p1, internal, 179803, 179897
-recovered pasa_asmbl_54489.p1, internal, 180108, 180323
-recovered pasa_asmbl_54489.p1, internal, 180461, 180697
-recovered pasa_asmbl_54489.p1, internal, 180776, 180993
-recovered pasa_asmbl_54489.p1, internal, 181191, 181266
Valid prediction for GeneMark_model.40612_t
Valid prediction for GeneMark_model.40636_t
Valid prediction for Augustus_model.g15906.t1
Valid prediction for GlimmerHMM_glimmerT_23681-T1
Valid prediction for GeneMark_model.40640_t
Valid prediction for GlimmerHMM_glimmerT_23706-T1
Valid prediction for GlimmerHMM_glimmerT_23715-T1
Valid prediction for GeneMark_model.40624_t
Valid prediction for Augustus_model.g15897.t1
Valid prediction for snap_scaffold_9-snap.2710-T1
Valid prediction for GeneMark_model.40596_t
Valid prediction for GlimmerHMM_glimmerT_23702-T1
Valid prediction for GlimmerHMM_glimmerT_23695-T1
Valid prediction for GeneMark_model.40618_t
Valid prediction for GeneMark_model.40582_t
Valid prediction for GeneMark_model.40619_t
Valid prediction for GlimmerHMM_glimmerT_23683-T1
Valid prediction for Augustus_model.g15903.t1
Valid prediction for GlimmerHMM_glimmerT_23712-T1
Valid prediction for GeneMark_model.40629_t
Valid prediction for GeneMark_model.40608_t
Valid prediction for Augustus_model.g15900.t1
Valid prediction for snap_scaffold_9-snap.2711-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g15909.t1
Valid prediction for GeneMark_model.40595_t
Valid prediction for GlimmerHMM_glimmerT_23704-T1
Valid prediction for GeneMark_model.40590_t
Valid prediction for snap_scaffold_9-snap.2713-T1
Valid prediction for snap_scaffold_9-snap.2727-T1
Valid prediction for GeneMark_model.40628_t
Valid prediction for Augustus_model.g15895.t1
Valid prediction for snap_scaffold_9-snap.2694-T1
Valid prediction for GeneMark_model.40623_t
Valid prediction for GeneMark_model.40637_t
Valid prediction for snap_scaffold_9-snap.2717-T1
Valid prediction for GeneMark_model.40611_t
Valid prediction for GlimmerHMM_glimmerT_23687-T1
Valid prediction for GeneMark_model.40597_t
Valid prediction for GeneMark_model.40634_t
Valid prediction for GeneMark_model.40609_t
Valid prediction for GlimmerHMM_glimmerT_23711-T1
Valid prediction for snap_scaffold_9-snap.2731-T1
Valid prediction for snap_scaffold_9-snap.2722-T1
Valid prediction for GeneMark_model.40641_t
Valid prediction for Augustus_model.g15894.t1
Valid prediction for GlimmerHMM_glimmerT_23708-T1
Valid prediction for snap_scaffold_9-snap.2688-T1
Valid prediction for GeneMark_model.40603_t
Valid prediction for snap_scaffold_9-snap.2697-T1
Valid prediction for GeneMark_model.40588_t
Valid prediction for GeneMark_model.40579_t
Valid prediction for GeneMark_model.40617_t
Valid prediction for GeneMark_model.40581_t
Valid prediction for Augustus_model.g15893.t1
Valid prediction for snap_scaffold_9-snap.2719-T1
Valid prediction for GeneMark_model.40631_t
Valid prediction for snap_scaffold_9-snap.2725-T1
Valid prediction for GeneMark_model.40607_t
Valid prediction for Augustus_model.g15907.t1
Valid prediction for snap_scaffold_9-snap.2701-T1
Valid prediction for GeneMark_model.40599_t
Valid prediction for GeneMark_model.40614_t
Valid prediction for GlimmerHMM_glimmerT_23705-T1
Valid prediction for snap_scaffold_9-snap.2728-T1
Valid prediction for snap_scaffold_9-snap.2691-T1
Couldn't classify 166907, 167248
Sorry, prediction pasa_asmbl_55407.p1 fails validation.
(CTT)	 GA	166907-167248	GG	AAG
Valid prediction for GlimmerHMM_glimmerT_23693-T1
Valid prediction for Augustus_model.g15899.t1
Valid prediction for GeneMark_model.40620_t
Valid prediction for GeneMark_model.40616_t
Valid prediction for GeneMark_model.40605_t
Valid prediction for snap_scaffold_9-snap.2708-T1
Valid prediction for GeneMark_model.40594_t
Valid prediction for snap_scaffold_9-snap.2693-T1
Valid prediction for snap_scaffold_9-snap.2689-T1
Valid prediction for snap_scaffold_9-snap.2705-T1
Valid prediction for GeneMark_model.40632_t
Valid prediction for snap_scaffold_9-snap.2698-T1
Valid prediction for GeneMark_model.40592_t
Valid prediction for GlimmerHMM_glimmerT_23713-T1
Valid prediction for GlimmerHMM_glimmerT_23684-T1
Valid prediction for GeneMark_model.40622_t
Valid prediction for GeneMark_model.40587_t
Valid prediction for GeneMark_model.40585_t
Valid prediction for GlimmerHMM_glimmerT_23690-T1
Valid prediction for GlimmerHMM_glimmerT_23691-T1
Valid prediction for GlimmerHMM_glimmerT_23686-T1
Valid prediction for GeneMark_model.40583_t
Valid prediction for GeneMark_model.40639_t
Valid prediction for GlimmerHMM_glimmerT_23688-T1
Valid prediction for GlimmerHMM_glimmerT_23709-T1
Valid prediction for GeneMark_model.40601_t
Valid prediction for GeneMark_model.40613_t
Valid prediction for snap_scaffold_9-snap.2720-T1
Valid prediction for GlimmerHMM_glimmerT_23689-T1
Valid prediction for GlimmerHMM_glimmerT_23703-T1
Valid prediction for snap_scaffold_9-snap.2715-T1
Valid prediction for snap_scaffold_9-snap.2730-T1
Valid prediction for GeneMark_model.40630_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8346, rend_intergenic: 5445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15603, rend_intergenic: 11279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26500, rend_intergenic: 25778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31118, rend_intergenic: 30049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62534, rend_intergenic: 54300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62840, rend_intergenic: 62573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76783, rend_intergenic: 63093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81553, rend_intergenic: 80364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97169, rend_intergenic: 88023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112609, rend_intergenic: 108351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114803, rend_intergenic: 112906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118403, rend_intergenic: 115863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121246, rend_intergenic: 118430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122435, rend_intergenic: 121423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127642, rend_intergenic: 122951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131955, rend_intergenic: 129967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138038, rend_intergenic: 135885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146663, rend_intergenic: 138204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162137, rend_intergenic: 157760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182455, rend_intergenic: 164698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190928, rend_intergenic: 186301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 199364
-exon list size: 999


building trellis

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38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 8346, rend_intergenic: 5445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15603, rend_intergenic: 11279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26500, rend_intergenic: 25778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31118, rend_intergenic: 30049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62534, rend_intergenic: 54300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62840, rend_intergenic: 62573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76783, rend_intergenic: 63093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81553, rend_intergenic: 80364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97169, rend_intergenic: 88023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112609, rend_intergenic: 108351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114803, rend_intergenic: 112906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118403, rend_intergenic: 115863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121246, rend_intergenic: 118430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122435, rend_intergenic: 121423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127642, rend_intergenic: 122951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131955, rend_intergenic: 129967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138038, rend_intergenic: 135885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146663, rend_intergenic: 138204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162137, rend_intergenic: 157760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182455, rend_intergenic: 164698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190928, rend_intergenic: 186301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11986
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
7.8    
9.8    
11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
23.5    
25.5    
27.5    
29.4    
31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 4 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 188904 - 199364
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support