-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_12784315-13043233 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.40389_t Valid prediction for snap_scaffold_9-snap.2563-T1 Valid prediction for snap_scaffold_9-snap.2581-T1 Valid prediction for snap_scaffold_9-snap.2575-T1 Valid prediction for GlimmerHMM_glimmerT_23599-T1 Valid prediction for snap_scaffold_9-snap.2594-T1 Valid prediction for snap_scaffold_9-snap.2592-T1 Couldn't classify 256382, 256566 Couldn't classify 256594, 256597 Sorry, prediction CodingQuarry_transcript_62222-T1 fails validation. (ATG) AG 256036-256086 GT AGG (GTG) AG 256382-256566 AT ACA (ATG) AC 256594-256597 CC GAC -recovered CodingQuarry_transcript_62222-T1, initial, 256036, 256086 -recovered CodingQuarry_transcript_62222-T1, internal, 256036, 256086 Valid prediction for GeneMark_model.40353_t Valid prediction for snap_scaffold_9-snap.2574-T1 Valid prediction for snap_scaffold_9-snap.2547-T1 Valid prediction for Augustus_model.g15836.t1 Valid prediction for GeneMark_model.40439_t Valid prediction for GeneMark_model.40370_t Valid prediction for GeneMark_model.40395_t Valid prediction for snap_scaffold_9-snap.2565-T1 Valid prediction for HiQ_model.g15854.t1 Valid prediction for GeneMark_model.40393_t Valid prediction for GeneMark_model.40351_t Valid prediction for snap_scaffold_9-snap.2554-T1 Valid prediction for Augustus_model.g15833.t1 Valid prediction for snap_scaffold_9-snap.2576-T1 Valid prediction for snap_scaffold_9-snap.2595-T1 Valid prediction for GeneMark_model.40391_t Valid prediction for snap_scaffold_9-snap.2571-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.40434_t Valid prediction for Augustus_model.g15843.t1 Couldn't classify 39530, 39633 Sorry, prediction pasa_asmbl_54449.p1 fails validation. (GCT) AG 39530-39633 GT AGG (GTC) AG 39787-39863 GT AGG (TAC) AG 40211-40289 GT AAG (GTA) AG 40494-40679 GT AGG (GAA) AG 40920-41097 GT AGG (ATG) AG 41274-41447 CA AGC -recovered pasa_asmbl_54449.p1, terminal, 41274, 41447 -recovered pasa_asmbl_54449.p1, internal, 39530, 39633 -recovered pasa_asmbl_54449.p1, internal, 39787, 39863 -recovered pasa_asmbl_54449.p1, internal, 40211, 40289 -recovered pasa_asmbl_54449.p1, internal, 40494, 40679 -recovered pasa_asmbl_54449.p1, internal, 40920, 41097 Valid prediction for GeneMark_model.40399_t Valid prediction for GlimmerHMM_glimmerT_23626-T1 Valid prediction for GeneMark_model.40385_t Valid prediction for GlimmerHMM_glimmerT_23595-T1 Valid prediction for GlimmerHMM_glimmerT_23606-T1 Valid prediction for GeneMark_model.40382_t Valid prediction for GlimmerHMM_glimmerT_23609-T1 Valid prediction for GeneMark_model.40431_t Couldn't classify 44356, 44413 Sorry, prediction pasa_asmbl_54452.p1 fails validation. (CGT) TC 44356-44413 GT AGG (AGC) AG 44559-44699 GT CGG (GCA) AG 44798-44896 GT TGG (GGA) AG 45003-45089 GT GAG (GTC) AG 45202-45371 GG GAG -recovered pasa_asmbl_54452.p1, terminal, 45202, 45371 -recovered pasa_asmbl_54452.p1, internal, 44559, 44699 -recovered pasa_asmbl_54452.p1, internal, 44798, 44896 -recovered pasa_asmbl_54452.p1, internal, 45003, 45089 Couldn't classify 43249, 43388 Couldn't classify 43950, 44058 Sorry, prediction pasa_asmbl_54705.p1 fails validation. (AAC) GG 43249-43388 GT AAG (GAA) AG 43805-43852 GT AGG (CGG) AG 43950-44058 TA CCT add_exon() Sorry, pasa_asmbl_54705.p1 43805-43852-terminal-1 is invalid. -recovered pasa_asmbl_54705.p1, terminal, 43805, 43852 -recovered pasa_asmbl_54705.p1, internal, 43805, 43852 Valid prediction for GeneMark_model.40424_t Couldn't classify 25850, 25894 Sorry, prediction pasa_asmbl_54447.p1 fails validation. (AGA) AC 25850-25894 GT CTG (TAT) AG 26223-26276 GT AGG (ATC) AG 26448-26614 GT TGG (GTA) AG 26820-27053 GT AGG (CTC) AG 27239-27433 GT CTG (AGT) AG 27567-27701 GT GTG (AGA) AG 27789-28017 AG AGA -recovered pasa_asmbl_54447.p1, terminal, 27789, 28017 -recovered pasa_asmbl_54447.p1, internal, 26223, 26276 -recovered pasa_asmbl_54447.p1, internal, 26448, 26614 -recovered pasa_asmbl_54447.p1, internal, 26820, 27053 -recovered pasa_asmbl_54447.p1, internal, 27239, 27433 -recovered pasa_asmbl_54447.p1, internal, 27567, 27701 Valid prediction for snap_scaffold_9-snap.2568-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_9-snap.2546-T1 Valid prediction for snap_scaffold_9-snap.2583-T1 Valid prediction for GlimmerHMM_glimmerT_23623-T1 Valid prediction for Augustus_model.g15835.t1 Valid prediction for snap_scaffold_9-snap.2551-T1 Couldn't classify 19938, 20471 Sorry, prediction pasa_asmbl_54446.p1 fails validation. (ATG) TA 19938-20471 AG TCA Valid prediction for snap_scaffold_9-snap.2557-T1 Valid prediction for GeneMark_model.40427_t Valid prediction for GeneMark_model.40362_t Couldn't classify 61246, 61384 Couldn't classify 62506, 62643 Sorry, prediction pasa_asmbl_54454.p1 fails validation. (TTT) AG 61246-61384 GT AGG (CGG) AG 61841-61972 GT CGG (GCT) AG 62206-62405 GT TGG (CCG) AG 62506-62643 AA GCA -recovered pasa_asmbl_54454.p1, internal, 61246, 61384 -recovered pasa_asmbl_54454.p1, internal, 61841, 61972 -recovered pasa_asmbl_54454.p1, internal, 62206, 62405 Valid prediction for GlimmerHMM_glimmerT_23618-T1 Valid prediction for GeneMark_model.40386_t Valid prediction for GlimmerHMM_glimmerT_23597-T1 Valid prediction for snap_scaffold_9-snap.2560-T1 Valid prediction for GeneMark_model.40369_t Valid prediction for GeneMark_model.40422_t Valid prediction for Augustus_model.g15855.t1 Valid prediction for GeneMark_model.40376_t Valid prediction for GeneMark_model.40417_t Valid prediction for GeneMark_model.40363_t Valid prediction for GlimmerHMM_glimmerT_23601-T1 Valid prediction for GlimmerHMM_glimmerT_23602-T1 Couldn't classify 252785, 252809 Couldn't classify 255950, 255980 Sorry, prediction pasa_asmbl_54460.p1 fails validation. (GGC) AA 252785-252809 GT AGG (CTA) AG 253263-253610 GT AGG (CCC) AG 253871-253992 GT AGG (GTT) AG 254174-254299 GT AGG (AGG) AG 254478-254555 GC AGG (ATA) AG 254856-254951 GT AAG (ATG) AG 255076-255153 GT CGG (TCT) AG 255486-255724 GT CTG (GGA) AG 255950-255980 GG AGG -recovered pasa_asmbl_54460.p1, initial, 255076, 255153 -recovered pasa_asmbl_54460.p1, internal, 253263, 253610 -recovered pasa_asmbl_54460.p1, internal, 253871, 253992 -recovered pasa_asmbl_54460.p1, internal, 254174, 254299 -recovered pasa_asmbl_54460.p1, internal, 254478, 254555 -recovered pasa_asmbl_54460.p1, internal, 254856, 254951 -recovered pasa_asmbl_54460.p1, internal, 255076, 255153 -recovered pasa_asmbl_54460.p1, internal, 255486, 255724 Valid prediction for GeneMark_model.40402_t Valid prediction for GeneMark_model.40415_t Valid prediction for GeneMark_model.40372_t Couldn't classify 63067, 63124 Couldn't classify 65212, 65373 Sorry, prediction pasa_asmbl_54455.p1 fails validation. (AAC) TT 63067-63124 GT AGG (ACA) AG 63346-63363 GT TGG (ACA) AG 63609-63765 GT AGG (TGC) AG 63882-63993 GT TGG (AGG) AG 64802-64879 GT AGG (GAG) AG 65212-65373 CA CCC -recovered pasa_asmbl_54455.p1, internal, 63346, 63363 -recovered pasa_asmbl_54455.p1, internal, 63609, 63765 -recovered pasa_asmbl_54455.p1, internal, 63882, 63993 -recovered pasa_asmbl_54455.p1, internal, 64802, 64879 Valid prediction for snap_scaffold_9-snap.2585-T1 Valid prediction for GlimmerHMM_glimmerT_23612-T1 Valid prediction for Augustus_model.g15849.t1 Valid prediction for GeneMark_model.40416_t Valid prediction for GeneMark_model.40412_t Valid prediction for GeneMark_model.40409_t Valid prediction for GeneMark_model.40419_t Valid prediction for Augustus_model.g15829.t1 Valid prediction for GeneMark_model.40397_t Valid prediction for GeneMark_model.40360_t Valid prediction for GeneMark_model.40428_t Valid prediction for GeneMark_model.40430_t Valid prediction for GlimmerHMM_glimmerT_23622-T1 Valid prediction for CodingQuarry_transcript_62221-T1 Valid prediction for GeneMark_model.40380_t Valid prediction for snap_scaffold_9-snap.2542-T1 Valid prediction for snap_scaffold_9-snap.2587-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for Augustus_model.g15851.t1 Valid prediction for snap_scaffold_9-snap.2573-T1 Valid prediction for GeneMark_model.40367_t Valid prediction for snap_scaffold_9-snap.2570-T1 Valid prediction for GeneMark_model.40373_t Valid prediction for Augustus_model.g15842.t1 Valid prediction for Augustus_model.g15834.t1 Valid prediction for snap_scaffold_9-snap.2562-T1 Valid prediction for GlimmerHMM_glimmerT_23603-T1 Valid prediction for GlimmerHMM_glimmerT_23627-T1 Valid prediction for GlimmerHMM_glimmerT_23625-T1 Valid prediction for Augustus_model.g15837.t1 Valid prediction for GeneMark_model.40413_t Valid prediction for Augustus_model.g15839.t1 Valid prediction for GeneMark_model.40374_t Valid prediction for Augustus_model.g15828.t1 Valid prediction for GeneMark_model.40400_t Valid prediction for Augustus_model.g15853.t1 Valid prediction for snap_scaffold_9-snap.2577-T1 Valid prediction for pasa_asmbl_54456.p2 Valid prediction for GeneMark_model.40357_t Valid prediction for GeneMark_model.40405_t Valid prediction for GeneMark_model.40435_t Valid prediction for GeneMark_model.40407_t Valid prediction for Augustus_model.g15830.t1 Valid prediction for Augustus_model.g15831.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.40392_t Valid prediction for snap_scaffold_9-snap.2588-T1 Valid prediction for snap_scaffold_9-snap.2593-T1 Valid prediction for GeneMark_model.40432_t Valid prediction for GeneMark_model.40421_t Valid prediction for Augustus_model.g15852.t1 Valid prediction for GeneMark_model.40414_t Valid prediction for snap_scaffold_9-snap.2584-T1 Valid prediction for GeneMark_model.40388_t Valid prediction for snap_scaffold_9-snap.2579-T1 Valid prediction for snap_scaffold_9-snap.2559-T1 Valid prediction for GeneMark_model.40411_t Valid prediction for GlimmerHMM_glimmerT_23614-T1 Valid prediction for GeneMark_model.40396_t Valid prediction for GeneMark_model.40433_t Valid prediction for snap_scaffold_9-snap.2544-T1 Valid prediction for Augustus_model.g15847.t1 Valid prediction for GeneMark_model.40358_t Valid prediction for GeneMark_model.40352_t Valid prediction for Augustus_model.g15846.t1 Valid prediction for GlimmerHMM_glimmerT_23607-T1 Valid prediction for snap_scaffold_9-snap.2555-T1 Valid prediction for Augustus_model.g15850.t1 Valid prediction for snap_scaffold_9-snap.2553-T1 Valid prediction for GeneMark_model.40420_t Valid prediction for snap_scaffold_9-snap.2572-T1 Valid prediction for GeneMark_model.40426_t Valid prediction for CodingQuarry_transcript_62220-T1 Valid prediction for GeneMark_model.40378_t Valid prediction for GlimmerHMM_glimmerT_23610-T1 Valid prediction for GlimmerHMM_glimmerT_23624-T1 Valid prediction for GeneMark_model.40379_t Valid prediction for Augustus_model.g15848.t1 Valid prediction for snap_scaffold_9-snap.2543-T1 Valid prediction for GlimmerHMM_glimmerT_23620-T1 Valid prediction for GeneMark_model.40425_t Valid prediction for GlimmerHMM_glimmerT_23619-T1 Valid prediction for snap_scaffold_9-snap.2582-T1 Valid prediction for GeneMark_model.40359_t Valid prediction for snap_scaffold_9-snap.2590-T1 Valid prediction for snap_scaffold_9-snap.2552-T1 Valid prediction for GeneMark_model.40438_t Valid prediction for snap_scaffold_9-snap.2591-T1 Valid prediction for snap_scaffold_9-snap.2578-T1 Valid prediction for GlimmerHMM_glimmerT_23617-T1 Valid prediction for GlimmerHMM_glimmerT_23594-T1 Valid prediction for GeneMark_model.40384_t Valid prediction for GeneMark_model.40440_t Valid prediction for snap_scaffold_9-snap.2549-T1 Valid prediction for GlimmerHMM_glimmerT_23605-T1 Valid prediction for GeneMark_model.40410_t Valid prediction for GeneMark_model.40366_t Valid prediction for GlimmerHMM_glimmerT_23621-T1 Valid prediction for GeneMark_model.40403_t Valid prediction for GeneMark_model.40437_t Valid prediction for Augustus_model.g15844.t1 Couldn't classify 12763, 12856 Sorry, prediction pasa_asmbl_55693.p1 fails validation. (GGC) CA 12763-12856 GT GGG (CCT) AG 13033-13097 GT ATG (ATT) AG 13466-13527 GT AGG (GGA) AG 13733-13814 GT AGG (GAG) AG 13900-13947 CT AGC -recovered pasa_asmbl_55693.p1, terminal, 13900, 13947 -recovered pasa_asmbl_55693.p1, internal, 13033, 13097 -recovered pasa_asmbl_55693.p1, internal, 13466, 13527 -recovered pasa_asmbl_55693.p1, internal, 13733, 13814 Valid prediction for snap_scaffold_9-snap.2567-T1 Valid prediction for snap_scaffold_9-snap.2589-T1 Valid prediction for GeneMark_model.40377_t Valid prediction for snap_scaffold_9-snap.2550-T1 Valid prediction for GlimmerHMM_glimmerT_23615-T1 Valid prediction for GeneMark_model.40354_t Valid prediction for Augustus_model.g15832.t1 Valid prediction for GeneMark_model.40361_t Valid prediction for snap_scaffold_9-snap.2561-T1 Valid prediction for GeneMark_model.40401_t Valid prediction for Augustus_model.g15845.t1 Valid prediction for GlimmerHMM_glimmerT_23598-T1 Valid prediction for GeneMark_model.40429_t Valid prediction for Augustus_model.g15838.t1 Valid prediction for snap_scaffold_9-snap.2566-T1 Valid prediction for GeneMark_model.40390_t Valid prediction for snap_scaffold_9-snap.2545-T1 Valid prediction for GeneMark_model.40423_t Valid prediction for GlimmerHMM_glimmerT_23604-T1 Valid prediction for GeneMark_model.40356_t Valid prediction for GeneMark_model.40387_t Valid prediction for GeneMark_model.40408_t Valid prediction for GeneMark_model.40436_t Valid prediction for snap_scaffold_9-snap.2548-T1 Valid prediction for GlimmerHMM_glimmerT_23608-T1 Valid prediction for GlimmerHMM_glimmerT_23596-T1 Valid prediction for GeneMark_model.40371_t Valid prediction for GeneMark_model.40404_t Couldn't classify 9241, 9270 Couldn't classify 12475, 12618 Sorry, prediction pasa_asmbl_55373.p1 fails validation. (GTT) GT 9241-9270 GT GGG (GCT) AG 9370-9511 GT TGG (GTT) AG 9605-9719 GT AGG (GAG) AG 10041-10226 GT AAG (GCA) AG 10417-10588 GT AGG (GTT) AG 10758-10838 GT GGG (GTG) AG 10936-11065 GT AGG (GAG) AG 11269-11369 GT GGG (ACA) AG 11609-11779 GT AGG (ATC) AG 12323-12382 GT AGG (GCC) AG 12475-12618 AC GGA add_exon() Sorry, pasa_asmbl_55373.p1 9605-9719-terminal-3 is invalid. -recovered pasa_asmbl_55373.p1, terminal, 9605, 9719 -recovered pasa_asmbl_55373.p1, internal, 9370, 9511 -recovered pasa_asmbl_55373.p1, internal, 9605, 9719 -recovered pasa_asmbl_55373.p1, internal, 10041, 10226 -recovered pasa_asmbl_55373.p1, internal, 10417, 10588 -recovered pasa_asmbl_55373.p1, internal, 10758, 10838 -recovered pasa_asmbl_55373.p1, internal, 10936, 11065 -recovered pasa_asmbl_55373.p1, internal, 11269, 11369 -recovered pasa_asmbl_55373.p1, internal, 11609, 11779 -recovered pasa_asmbl_55373.p1, internal, 12323, 12382 Valid prediction for Augustus_model.g15840.t1 Valid prediction for GeneMark_model.40375_t Valid prediction for GlimmerHMM_glimmerT_23616-T1 Valid prediction for snap_scaffold_9-snap.2558-T1 Valid prediction for GeneMark_model.40368_t Valid prediction for snap_scaffold_9-snap.2556-T1 Valid prediction for GeneMark_model.40365_t Valid prediction for Augustus_model.g15841.t1 Valid prediction for GeneMark_model.40418_t Valid prediction for GlimmerHMM_glimmerT_23611-T1 Valid prediction for snap_scaffold_9-snap.2580-T1 Valid prediction for snap_scaffold_9-snap.2569-T1 Valid prediction for snap_scaffold_9-snap.2586-T1 Valid prediction for snap_scaffold_9-snap.2564-T1 Valid prediction for GeneMark_model.40406_t Valid prediction for GeneMark_model.40398_t Valid prediction for GlimmerHMM_glimmerT_23613-T1 Valid prediction for GeneMark_model.40394_t Valid prediction for GeneMark_model.40381_t Valid prediction for GlimmerHMM_glimmerT_23600-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18870, rend_intergenic: 4690 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28017, rend_intergenic: 23031 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45371, rend_intergenic: 35602 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50643, rend_intergenic: 48984 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53723, rend_intergenic: 53051 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64676, rend_intergenic: 58158 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73481, rend_intergenic: 66084 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81061, rend_intergenic: 80099 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 90462, rend_intergenic: 82463 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96392, rend_intergenic: 93450 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103424, rend_intergenic: 100871 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120500, rend_intergenic: 115043 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126871, rend_intergenic: 122156 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130281, rend_intergenic: 126920 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184762, rend_intergenic: 131085 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198260, rend_intergenic: 191273 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209761, rend_intergenic: 207186 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212784, rend_intergenic: 210992 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217198, rend_intergenic: 212985 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223039, rend_intergenic: 222064 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227472, rend_intergenic: 227321 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 244278, rend_intergenic: 229656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 250881, rend_intergenic: 245005 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256279, rend_intergenic: 252693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 258919 -exon list size: 1142 building trellis 0.1 0.2 0.3 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.7 99.8 99.9 -found 56 predictions from path traversal Error with prediction: snap lend_intergenic: 18870, rend_intergenic: 4690 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28017, rend_intergenic: 23031 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45371, rend_intergenic: 35602 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50643, rend_intergenic: 48984 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53723, rend_intergenic: 53051 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64676, rend_intergenic: 58158 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73481, rend_intergenic: 66084 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81061, rend_intergenic: 80099 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 90462, rend_intergenic: 82463 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96392, rend_intergenic: 93450 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103424, rend_intergenic: 100871 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120500, rend_intergenic: 115043 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126871, rend_intergenic: 122156 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130281, rend_intergenic: 126920 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184762, rend_intergenic: 131085 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198260, rend_intergenic: 191273 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209761, rend_intergenic: 207186 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 212784, rend_intergenic: 210992 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217198, rend_intergenic: 212985 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223039, rend_intergenic: 222064 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227472, rend_intergenic: 227321 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 244278, rend_intergenic: 229656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 250881, rend_intergenic: 245005 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256279, rend_intergenic: 252693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 29 predictions persist after filtering for low support