-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_12223002-12470207

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.40211_t
Valid prediction for GeneMark_model.40259_t
Valid prediction for GlimmerHMM_glimmerT_23536-T1
Valid prediction for CodingQuarry_transcript_62200-T1
Valid prediction for GlimmerHMM_glimmerT_23521-T1
Valid prediction for pasa_asmbl_54409.p1
Valid prediction for Augustus_model.g15778.t1
Valid prediction for snap_scaffold_9-snap.2465-T1
Valid prediction for Augustus_model.g15790.t1
Valid prediction for GeneMark_model.40213_t
Valid prediction for snap_scaffold_9-snap.2441-T1
Valid prediction for snap_scaffold_9-snap.2429-T1
Valid prediction for snap_scaffold_9-snap.2439-T1
Valid prediction for GeneMark_model.40219_t
Valid prediction for GeneMark_model.40256_t
Valid prediction for GeneMark_model.40261_t
Valid prediction for GeneMark_model.40265_t
Valid prediction for GeneMark_model.40204_t
Valid prediction for snap_scaffold_9-snap.2450-T1
Valid prediction for GlimmerHMM_glimmerT_23528-T1
Valid prediction for GeneMark_model.40194_t
Valid prediction for GeneMark_model.40227_t
Valid prediction for GeneMark_model.40229_t
Valid prediction for GeneMark_model.40192_t
Valid prediction for GlimmerHMM_glimmerT_23529-T1
Valid prediction for pasa_asmbl_54402.p1
Valid prediction for Augustus_model.g15772.t1
Valid prediction for Augustus_model.g15783.t1
Valid prediction for GeneMark_model.40206_t
Valid prediction for snap_scaffold_9-snap.2431-T1
Valid prediction for GeneMark_model.40198_t
Couldn't classify 211458, 211503
Couldn't classify 212226, 212326
Sorry, prediction pasa_asmbl_54652.p1 fails validation.
(CAC)	 GA	211458-211503	GT	GGG
(TGC)	 AG	211655-211804	GT	AGG
(TTC)	 AG	212226-212326	CG	CAC
-recovered pasa_asmbl_54652.p1, internal, 211655, 211804
Valid prediction for snap_scaffold_9-snap.2452-T1
Valid prediction for GlimmerHMM_glimmerT_23540-T1
Valid prediction for GeneMark_model.40239_t
Couldn't classify 77135, 77497
Sorry, prediction pasa_asmbl_54406.p1 fails validation.
(GCG)	 GA	77135-77497	CA	CAC
Valid prediction for GlimmerHMM_glimmerT_23552-T1
Valid prediction for GeneMark_model.40244_t
Valid prediction for HiQ_model.g15800.t1
Valid prediction for Augustus_model.g15773.t1
Valid prediction for GlimmerHMM_glimmerT_23546-T1
Valid prediction for GeneMark_model.40254_t
Valid prediction for GeneMark_model.40196_t
Valid prediction for GeneMark_model.40258_t
Valid prediction for Augustus_model.g15781.t1
Valid prediction for Augustus_model.g15774.t1
Valid prediction for GlimmerHMM_glimmerT_23551-T1
Valid prediction for GeneMark_model.40270_t
Couldn't classify 217879, 217902
Sorry, prediction pasa_asmbl_54684.p1 fails validation.
(ATG)	 TC	217193-217408	GT	AGG
(TTC)	 AG	217625-217771	GT	AGG
(CAC)	 AG	217879-217902	CT	CGC
-recovered pasa_asmbl_54684.p1, initial, 217193, 217408
-recovered pasa_asmbl_54684.p1, internal, 217625, 217771
Valid prediction for Augustus_model.g15782.t1
Valid prediction for GeneMark_model.40222_t
Valid prediction for snap_scaffold_9-snap.2466-T1
Valid prediction for GeneMark_model.40246_t
Valid prediction for snap_scaffold_9-snap.2449-T1
Valid prediction for snap_scaffold_9-snap.2456-T1
Valid prediction for pasa_asmbl_54405.p2
Valid prediction for GlimmerHMM_glimmerT_23527-T1
Valid prediction for snap_scaffold_9-snap.2426-T1
Valid prediction for GeneMark_model.40208_t
Valid prediction for snap_scaffold_9-snap.2444-T1
Valid prediction for GlimmerHMM_glimmerT_23544-T1
Valid prediction for GeneMark_model.40250_t
Valid prediction for GlimmerHMM_glimmerT_23523-T1
Valid prediction for snap_scaffold_9-snap.2434-T1
Valid prediction for snap_scaffold_9-snap.2460-T1
Sorry, intron length (4) is less than minimum required (10)
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_23547-T1
Valid prediction for snap_scaffold_9-snap.2464-T1
Valid prediction for GeneMark_model.40216_t
Valid prediction for GeneMark_model.40251_t
Valid prediction for GeneMark_model.40202_t
Valid prediction for GeneMark_model.40268_t
Couldn't classify 237084, 237152
Sorry, prediction pasa_asmbl_54418.p1 fails validation.
(ACA)	 CG	237084-237152	GT	AGG
(GTG)	 AG	240085-240215	GT	AGG
(GAT)	 AG	241133-241256	GT	TGG
(GAC)	 AG	241633-241791	GT	AGG
(ACG)	 AG	241980-242097	GT	GAG
(TGT)	 AG	242249-242334	GT	AGG
(AGA)	 AG	242550-242670	GT	ACG
(ATG)	 AG	242876-243120	GT	AGG
(GTG)	 AG	243284-243377	GT	TGG
(ACA)	 AG	243589-243779	GT	AGG
(CTG)	 AG	243948-244043	GT	ATG
(ATG)	 AG	244170-244305	GT	CGG
(GCT)	 AG	244891-245058	GT	TGG
(ATG)	 AG	245168-245361	CA	AAC
add_exon() Sorry, pasa_asmbl_54418.p1 242876-243120-initial-1 is invalid.
-recovered pasa_asmbl_54418.p1, initial, 242876, 243120
-recovered pasa_asmbl_54418.p1, initial, 244170, 244305
-recovered pasa_asmbl_54418.p1, terminal, 245168, 245361
-recovered pasa_asmbl_54418.p1, internal, 240085, 240215
-recovered pasa_asmbl_54418.p1, internal, 241133, 241256
-recovered pasa_asmbl_54418.p1, internal, 241633, 241791
-recovered pasa_asmbl_54418.p1, internal, 241980, 242097
-recovered pasa_asmbl_54418.p1, internal, 242249, 242334
-recovered pasa_asmbl_54418.p1, internal, 242550, 242670
-recovered pasa_asmbl_54418.p1, internal, 242876, 243120
-recovered pasa_asmbl_54418.p1, internal, 243284, 243377
-recovered pasa_asmbl_54418.p1, internal, 243589, 243779
-recovered pasa_asmbl_54418.p1, internal, 243948, 244043
-recovered pasa_asmbl_54418.p1, internal, 244170, 244305
-recovered pasa_asmbl_54418.p1, internal, 244891, 245058
Valid prediction for snap_scaffold_9-snap.2432-T1
Valid prediction for Augustus_model.g15796.t1
Valid prediction for GeneMark_model.40217_t
Valid prediction for GlimmerHMM_glimmerT_23545-T1
Valid prediction for GlimmerHMM_glimmerT_23526-T1
Valid prediction for GeneMark_model.40233_t
Couldn't classify 125628, 125948
Sorry, prediction pasa_asmbl_55338.p1 fails validation.
(GGC)	 GG	125628-125948	TG	AGT
Valid prediction for HiQ_model.g15776.t1
Valid prediction for GlimmerHMM_glimmerT_23519-T1
Valid prediction for snap_scaffold_9-snap.2424-T1
Valid prediction for snap_scaffold_9-snap.2447-T1
Valid prediction for HiQ_model.g15799.t1
Valid prediction for snap_scaffold_9-snap.2457-T1
Valid prediction for Augustus_model.g15795.t1
Valid prediction for GeneMark_model.40214_t
Valid prediction for GlimmerHMM_glimmerT_23550-T1
Valid prediction for GeneMark_model.40224_t
Valid prediction for pasa_asmbl_54416.p1
Valid prediction for GeneMark_model.40263_t
Valid prediction for Augustus_model.g15780.t1
Valid prediction for GlimmerHMM_glimmerT_23517-T1
Valid prediction for CodingQuarry_transcript_62205-T1
Valid prediction for GeneMark_model.40236_t
Valid prediction for GeneMark_model.40248_t
Valid prediction for GeneMark_model.40232_t
Valid prediction for GeneMark_model.40235_t
Valid prediction for GeneMark_model.40200_t
Valid prediction for GeneMark_model.40269_t
Valid prediction for snap_scaffold_9-snap.2436-T1
Valid prediction for snap_scaffold_9-snap.2419-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.40252_t
Valid prediction for GeneMark_model.40221_t
Valid prediction for snap_scaffold_9-snap.2455-T1
Valid prediction for GeneMark_model.40212_t
Valid prediction for GlimmerHMM_glimmerT_23535-T1
Valid prediction for GeneMark_model.40237_t
Valid prediction for snap_scaffold_9-snap.2428-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.2430-T1
Valid prediction for snap_scaffold_9-snap.2423-T1
Valid prediction for Augustus_model.g15787.t1
Valid prediction for GeneMark_model.40193_t
Valid prediction for GeneMark_model.40228_t
Valid prediction for GeneMark_model.40197_t
Valid prediction for pasa_asmbl_55331.p1
Valid prediction for GeneMark_model.40191_t
Valid prediction for snap_scaffold_9-snap.2448-T1
Valid prediction for GeneMark_model.40240_t
Valid prediction for GeneMark_model.40253_t
Valid prediction for GlimmerHMM_glimmerT_23543-T1
Valid prediction for pasa_asmbl_55329.p1
Valid prediction for GeneMark_model.40242_t
Valid prediction for Augustus_model.g15793.t1
Couldn't classify 132976, 133030
Sorry, prediction pasa_asmbl_55337.p1 fails validation.
(CAG)	 CT	132976-133030	GT	AGG
(GTA)	 AG	133990-134140	GT	AAG
(AAT)	 AG	134237-134870	AC	AAA
-recovered pasa_asmbl_55337.p1, terminal, 134237, 134870
-recovered pasa_asmbl_55337.p1, internal, 133990, 134140
Valid prediction for GeneMark_model.40267_t
Valid prediction for HiQ_model.g15784.t1
Valid prediction for Augustus_model.g15794.t1
Valid prediction for CodingQuarry_transcript_62202-T1
Valid prediction for GeneMark_model.40215_t
Valid prediction for snap_scaffold_9-snap.2458-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_23537-T1
Valid prediction for GeneMark_model.40225_t
Valid prediction for snap_scaffold_9-snap.2461-T1
Valid prediction for snap_scaffold_9-snap.2445-T1
Valid prediction for GlimmerHMM_glimmerT_23520-T1
Valid prediction for GeneMark_model.40255_t
Valid prediction for Augustus_model.g15797.t1
Valid prediction for GeneMark_model.40264_t
Valid prediction for snap_scaffold_9-snap.2463-T1
Valid prediction for snap_scaffold_9-snap.2443-T1
Valid prediction for GeneMark_model.40234_t
Valid prediction for CodingQuarry_transcript_62203-T1
Valid prediction for snap_scaffold_9-snap.2422-T1
Valid prediction for GeneMark_model.40249_t
Valid prediction for GlimmerHMM_glimmerT_23530-T1
Valid prediction for GeneMark_model.40199_t
Valid prediction for Augustus_model.g15775.t1
Valid prediction for Augustus_model.g15785.t1
Valid prediction for snap_scaffold_9-snap.2446-T1
Valid prediction for Augustus_model.g15788.t1
Valid prediction for GlimmerHMM_glimmerT_23533-T1
Valid prediction for GlimmerHMM_glimmerT_23541-T1
Valid prediction for GlimmerHMM_glimmerT_23531-T1
Valid prediction for GeneMark_model.40262_t
Valid prediction for GlimmerHMM_glimmerT_23532-T1
Valid prediction for snap_scaffold_9-snap.2453-T1
Valid prediction for GlimmerHMM_glimmerT_23538-T1
Valid prediction for GeneMark_model.40205_t
Valid prediction for GlimmerHMM_glimmerT_23524-T1
Valid prediction for Augustus_model.g15786.t1
Valid prediction for snap_scaffold_9-snap.2467-T1
Valid prediction for GeneMark_model.40207_t
Valid prediction for HiQ_model.g15777.t1
Valid prediction for snap_scaffold_9-snap.2459-T1
Valid prediction for GeneMark_model.40220_t
Valid prediction for GeneMark_model.40195_t
Valid prediction for GeneMark_model.40245_t
Valid prediction for snap_scaffold_9-snap.2437-T1
Valid prediction for GlimmerHMM_glimmerT_23549-T1
Valid prediction for GeneMark_model.40247_t
Valid prediction for snap_scaffold_9-snap.2454-T1
Valid prediction for GeneMark_model.40209_t
Valid prediction for Augustus_model.g15792.t1
Valid prediction for snap_scaffold_9-snap.2425-T1
Valid prediction for Augustus_model.g15779.t1
Valid prediction for snap_scaffold_9-snap.2462-T1
Valid prediction for GlimmerHMM_glimmerT_23518-T1
Valid prediction for GlimmerHMM_glimmerT_23548-T1
Valid prediction for snap_scaffold_9-snap.2420-T1
Valid prediction for GeneMark_model.40203_t
Valid prediction for GeneMark_model.40218_t
Valid prediction for GeneMark_model.40243_t
Valid prediction for GeneMark_model.40238_t
Valid prediction for pasa_asmbl_55333.p1
Valid prediction for GeneMark_model.40223_t
Couldn't classify 207349, 207378
Couldn't classify 208108, 208238
Sorry, prediction pasa_asmbl_55328.p1 fails validation.
(CCT)	 TG	207349-207378	GT	AGG
(GTG)	 AG	207529-207742	GT	TGG
(GTG)	 AG	208108-208238	GC	TGG
-recovered pasa_asmbl_55328.p1, internal, 207529, 207742
-recovered pasa_asmbl_55328.p1, internal, 208108, 208238
Valid prediction for GeneMark_model.40210_t
Valid prediction for GeneMark_model.40257_t
Valid prediction for GlimmerHMM_glimmerT_23525-T1
Valid prediction for snap_scaffold_9-snap.2440-T1
Valid prediction for CodingQuarry_transcript_62201-T1
Valid prediction for snap_scaffold_9-snap.2442-T1
Valid prediction for GeneMark_model.40230_t
Valid prediction for Augustus_model.g15798.t1
Valid prediction for snap_scaffold_9-snap.2427-T1
Valid prediction for GlimmerHMM_glimmerT_23534-T1
Valid prediction for GlimmerHMM_glimmerT_23542-T1
Valid prediction for GeneMark_model.40231_t
Couldn't classify 139953, 140007
Sorry, prediction pasa_asmbl_55335.p1 fails validation.
(CAG)	 CT	139953-140007	GT	AGG
(GTA)	 AG	141335-141482	GT	AAG
(CGA)	 AG	141574-142225	TT	GAT
-recovered pasa_asmbl_55335.p1, terminal, 141574, 142225
-recovered pasa_asmbl_55335.p1, internal, 141335, 141482
Valid prediction for snap_scaffold_9-snap.2433-T1
Valid prediction for snap_scaffold_9-snap.2435-T1
Valid prediction for GlimmerHMM_glimmerT_23522-T1
Valid prediction for Augustus_model.g15791.t1
Valid prediction for snap_scaffold_9-snap.2438-T1
Valid prediction for Augustus_model.g15789.t1
Valid prediction for GeneMark_model.40226_t
Valid prediction for GlimmerHMM_glimmerT_23539-T1
Valid prediction for GeneMark_model.40266_t
Valid prediction for GeneMark_model.40260_t
Valid prediction for snap_scaffold_9-snap.2421-T1
Valid prediction for snap_scaffold_9-snap.2451-T1
Valid prediction for GeneMark_model.40201_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 34262, rend_intergenic: 8444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48075, rend_intergenic: 44324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58468, rend_intergenic: 52128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69833, rend_intergenic: 68218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74991, rend_intergenic: 73988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81867, rend_intergenic: 81239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89697, rend_intergenic: 84703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99237, rend_intergenic: 95364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106108, rend_intergenic: 101607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116515, rend_intergenic: 115101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119358, rend_intergenic: 117148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124169, rend_intergenic: 120963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139319, rend_intergenic: 131207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146778, rend_intergenic: 141721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153736, rend_intergenic: 150088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162149, rend_intergenic: 154008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194354, rend_intergenic: 179397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215636, rend_intergenic: 194367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225951, rend_intergenic: 219271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245361, rend_intergenic: 240055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 247206
-exon list size: 999


building trellis

0.1    
0.2    
0.3    
0.4    
0.5    
0.6    
0.7    
0.8    
0.9    
1.0    
1.1    
1.2    
1.3    
1.4    
1.5    
1.6    
1.7    
1.8    
1.9    
2.0    
2.1    
2.2    
2.3    
2.4    
2.5    
2.6    
2.7    
2.8    
2.9    
3.0    
3.1    
3.2    
3.3    
3.4    
3.5    
3.6    
3.7    
3.8    
3.9    
4.0    
4.1    
4.2    
4.3    
4.4    
4.5    
4.6    
4.7    
4.8    
4.9    
5.0    
5.1    
5.2    
5.3    
5.4    
5.5    
5.6    
5.7    
5.8    
5.9    
6.0    
6.1    
6.2    
6.3    
6.4    
6.5    
6.6    
6.7    
6.8    
6.9    
7.0    
7.1    
7.2    
7.3    
7.4    
7.5    
7.6    
7.7    
7.8    
7.9    
8.0    
8.1    
8.2    
8.3    
8.4    
8.5    
8.6    
8.7    
8.8    
8.9    
9.0    
9.1    
9.2    
9.3    
9.4    
9.5    
9.6    
9.7    
9.8    
9.9    
10.0    
10.1    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.8    
10.9    
11.0    
11.1    
11.2    
11.3    
11.4    
11.5    
11.6    
11.7    
11.8    
11.9    
12.0    
12.1    
12.2    
12.3    
12.4    
12.5    
12.6    
12.7    
12.8    
12.9    
13.0    
13.1    
13.2    
13.3    
13.4    
13.5    
13.6    
13.7    
13.8    
13.9    
14.0    
14.1    
14.2    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
14.9    
15.0    
15.1    
15.2    
15.3    
15.4    
15.5    
15.6    
15.7    
15.8    
15.9    
16.0    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.7    
16.8    
16.9    
17.0    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.4    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 58 predictions from path traversal
Error with prediction: snap lend_intergenic: 34262, rend_intergenic: 8444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48075, rend_intergenic: 44324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58468, rend_intergenic: 52128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69833, rend_intergenic: 68218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74991, rend_intergenic: 73988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81867, rend_intergenic: 81239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89697, rend_intergenic: 84703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99237, rend_intergenic: 95364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106108, rend_intergenic: 101607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116515, rend_intergenic: 115101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119358, rend_intergenic: 117148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124169, rend_intergenic: 120963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139319, rend_intergenic: 131207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146778, rend_intergenic: 141721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153736, rend_intergenic: 150088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162149, rend_intergenic: 154008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194354, rend_intergenic: 179397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215636, rend_intergenic: 194367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225951, rend_intergenic: 219271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245361, rend_intergenic: 240055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 32 predictions persist after filtering for low support