-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_11653670-11891821 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_23438-T1 Valid prediction for snap_scaffold_9-snap.2306-T1 Valid prediction for GlimmerHMM_glimmerT_23444-T1 Valid prediction for GlimmerHMM_glimmerT_23430-T1 Valid prediction for snap_scaffold_9-snap.2293-T1 Valid prediction for snap_scaffold_9-snap.2319-T1 Valid prediction for GeneMark_model.40091_t Valid prediction for Augustus_model.g15712.t1 Valid prediction for snap_scaffold_9-snap.2300-T1 Valid prediction for GlimmerHMM_glimmerT_23437-T1 Valid prediction for Augustus_model.g15717.t1 Valid prediction for GeneMark_model.40084_t Valid prediction for pasa_asmbl_54356.p1 Valid prediction for pasa_asmbl_54348.p1 Valid prediction for GlimmerHMM_glimmerT_23442-T1 Valid prediction for Augustus_model.g15706.t1 Valid prediction for HiQ_model.g15707.t1 Valid prediction for HiQ_model.g15701.t1 Couldn't classify 75507, 75614 Sorry, prediction pasa_asmbl_54350.p1 fails validation. (ATG) TC 74881-75058 GT AGG (GGT) AG 75282-75427 GT AGG (GAC) AG 75507-75614 AG GGA -recovered pasa_asmbl_54350.p1, initial, 74881, 75058 -recovered pasa_asmbl_54350.p1, internal, 75282, 75427 Valid prediction for snap_scaffold_9-snap.2334-T1 Valid prediction for HiQ_model.g15708.t1 Valid prediction for GlimmerHMM_glimmerT_23436-T1 Valid prediction for HiQ_model.g15722.t1 Valid prediction for GlimmerHMM_glimmerT_23431-T1 Valid prediction for GlimmerHMM_glimmerT_23449-T1 Valid prediction for GeneMark_model.40075_t Valid prediction for HiQ_model.g15716.t1 Valid prediction for snap_scaffold_9-snap.2330-T1 Valid prediction for pasa_asmbl_54366.p1 Valid prediction for snap_scaffold_9-snap.2315-T1 Valid prediction for snap_scaffold_9-snap.2311-T1 Valid prediction for snap_scaffold_9-snap.2307-T1 Valid prediction for GlimmerHMM_glimmerT_23454-T1 Couldn't classify 232063, 232203 Sorry, prediction pasa_asmbl_54376.p1 fails validation. (CTC) AG 232063-232203 GT AGG (ACG) AG 232339-232547 GT GGG (GTC) AG 232721-232871 GT AGG (GCA) AG 233081-233204 GT AGG (GAA) AG 234043-234162 GT CGG (GAG) AG 234430-234522 GT GGG (GAC) AG 234665-234806 GT AGG (ACC) AG 235323-235429 GC AGG (GCA) AG 235523-235632 GT AGG (GTT) AG 236137-236274 GA GAG -recovered pasa_asmbl_54376.p1, terminal, 236137, 236274 -recovered pasa_asmbl_54376.p1, internal, 232063, 232203 -recovered pasa_asmbl_54376.p1, internal, 232339, 232547 -recovered pasa_asmbl_54376.p1, internal, 232721, 232871 -recovered pasa_asmbl_54376.p1, internal, 233081, 233204 -recovered pasa_asmbl_54376.p1, internal, 234043, 234162 -recovered pasa_asmbl_54376.p1, internal, 234430, 234522 -recovered pasa_asmbl_54376.p1, internal, 234665, 234806 -recovered pasa_asmbl_54376.p1, internal, 235323, 235429 -recovered pasa_asmbl_54376.p1, internal, 235523, 235632 Valid prediction for GeneMark_model.40083_t Valid prediction for Augustus_model.g15726.t1 Valid prediction for CodingQuarry_transcript_62167-T1 Valid prediction for snap_scaffold_9-snap.2343-T1 Valid prediction for GeneMark_model.40101_t Valid prediction for GeneMark_model.40069_t Valid prediction for GlimmerHMM_glimmerT_23464-T1 Valid prediction for Augustus_model.g15709.t1 Valid prediction for snap_scaffold_9-snap.2308-T1 Valid prediction for GeneMark_model.40099_t Valid prediction for Augustus_model.g15699.t1 Valid prediction for snap_scaffold_9-snap.2340-T1 Valid prediction for snap_scaffold_9-snap.2329-T1 Valid prediction for snap_scaffold_9-snap.2320-T1 Valid prediction for Augustus_model.g15714.t1 Valid prediction for Augustus_model.g15702.t1 Valid prediction for Augustus_model.g15732.t1 Valid prediction for snap_scaffold_9-snap.2310-T1 Couldn't classify 181740, 182183 Sorry, prediction pasa_asmbl_54369.p1 fails validation. (GTG) TG 181740-182183 CA AGC Valid prediction for GlimmerHMM_glimmerT_23434-T1 Valid prediction for snap_scaffold_9-snap.2338-T1 Valid prediction for GeneMark_model.40077_t Valid prediction for GeneMark_model.40078_t Valid prediction for HiQ_model.g15710.t1 Couldn't classify 222234, 222278 Sorry, prediction pasa_asmbl_54371.p1 fails validation. (ATG) CA 220193-220249 GT AGG (ATG) AG 220776-220882 GT ACG (GAG) AG 221016-221060 GT AAG (GTA) AG 221192-221345 GT TGG (ATC) AG 221628-221699 GT AGG (CCA) AG 221814-221902 GT AGG (GGT) AG 221989-222145 GT GGG (GAG) AG 222234-222278 CT AGC -recovered pasa_asmbl_54371.p1, initial, 220193, 220249 -recovered pasa_asmbl_54371.p1, initial, 220776, 220882 -recovered pasa_asmbl_54371.p1, internal, 220776, 220882 -recovered pasa_asmbl_54371.p1, internal, 221016, 221060 -recovered pasa_asmbl_54371.p1, internal, 221192, 221345 -recovered pasa_asmbl_54371.p1, internal, 221628, 221699 -recovered pasa_asmbl_54371.p1, internal, 221814, 221902 -recovered pasa_asmbl_54371.p1, internal, 221989, 222145 Valid prediction for Augustus_model.g15705.t1 Valid prediction for snap_scaffold_9-snap.2321-T1 Valid prediction for GeneMark_model.40072_t Valid prediction for snap_scaffold_9-snap.2326-T1 Valid prediction for snap_scaffold_9-snap.2309-T1 Valid prediction for GlimmerHMM_glimmerT_23443-T1 Couldn't classify 82302, 82344 Sorry, prediction pasa_asmbl_54353.p1 fails validation. (AAT) TG 82302-82344 GT AGG (GAG) AG 82518-82646 GT AGG (AGT) AG 82861-82972 GT AGG (GGA) AG 83430-83580 GT TGG (ACC) AG 83697-83828 GT AGG (GAT) AG 83970-84035 GT CAG (ACA) AG 84143-84211 GT AGG (CTG) AG 84296-84418 GT AGG (CTG) AG 84676-84804 GT AGG (GTC) AG 85992-86206 GT AGG (GCT) AG 86673-86760 GT AGG (CTG) AG 87350-87452 GT GTG (ATG) AG 87621-87700 CC GAC -recovered pasa_asmbl_54353.p1, terminal, 87621, 87700 -recovered pasa_asmbl_54353.p1, internal, 82518, 82646 -recovered pasa_asmbl_54353.p1, internal, 82861, 82972 -recovered pasa_asmbl_54353.p1, internal, 83430, 83580 -recovered pasa_asmbl_54353.p1, internal, 83697, 83828 -recovered pasa_asmbl_54353.p1, internal, 83970, 84035 -recovered pasa_asmbl_54353.p1, internal, 84143, 84211 -recovered pasa_asmbl_54353.p1, internal, 84296, 84418 -recovered pasa_asmbl_54353.p1, internal, 84676, 84804 -recovered pasa_asmbl_54353.p1, internal, 85992, 86206 -recovered pasa_asmbl_54353.p1, internal, 86673, 86760 -recovered pasa_asmbl_54353.p1, internal, 87350, 87452 Valid prediction for CodingQuarry_transcript_62168-T1 Valid prediction for CodingQuarry_transcript_62186-T1 Couldn't classify 131146, 131212 Sorry, prediction pasa_asmbl_54363.p1 fails validation. (GCT) TA 131146-131212 GT TGG (CCG) AG 131608-131774 GT AGG (GTG) AG 131943-132066 GT AGG (CGT) AG 132171-132250 GT GAG -recovered pasa_asmbl_54363.p1, terminal, 132171, 132250 -recovered pasa_asmbl_54363.p1, internal, 131608, 131774 -recovered pasa_asmbl_54363.p1, internal, 131943, 132066 -recovered pasa_asmbl_54363.p1, internal, 132171, 132250 Couldn't classify 223516, 223575 Sorry, prediction pasa_asmbl_54375.p1 fails validation. (AGT) GT 223516-223575 GT GGG (GAT) AG 223680-223772 GT AGG (GTT) AG 223878-223938 GT TGG (GTG) AG 224029-224142 GT TGG (GAG) AG 225852-225909 GT AGG (GCT) AG 226097-226165 GT AGG (GTC) AG 226351-226414 GT AGG (TTT) AG 226565-226636 GT TGG (GTG) AG 227089-227184 GC GAG -recovered pasa_asmbl_54375.p1, terminal, 227089, 227184 -recovered pasa_asmbl_54375.p1, internal, 223680, 223772 -recovered pasa_asmbl_54375.p1, internal, 223878, 223938 -recovered pasa_asmbl_54375.p1, internal, 224029, 224142 -recovered pasa_asmbl_54375.p1, internal, 225852, 225909 -recovered pasa_asmbl_54375.p1, internal, 226097, 226165 -recovered pasa_asmbl_54375.p1, internal, 226351, 226414 -recovered pasa_asmbl_54375.p1, internal, 226565, 226636 -recovered pasa_asmbl_54375.p1, internal, 227089, 227184 Valid prediction for CodingQuarry_transcript_62177-T1 Valid prediction for Augustus_model.g15733.t1 Couldn't classify 75618, 75626 Sorry, prediction pasa_asmbl_54351.p1 fails validation. (CTG) GT 75618-75626 GT CAG (GAC) AG 75752-75988 GT AGG (GTT) AG 76151-76217 GT AGG (GGC) AG 76296-76427 GT TGG (ATC) AG 76575-76674 GT AAG (GTA) AG 76817-76903 GT AAG (AAG) AG 77034-77216 GT AGG (GTT) AG 77346-77426 GT AGG (GAG) AG 77610-77767 GT AGG (GTC) AG 77985-78099 GT AGG (TGA) AG 78315-78423 GT AGG (AAA) AG 78583-78677 GT AGG (ATC) AG 78760-78829 GT CTG (CTT) AG 79032-79260 GT TGG (AGG) AG 79471-79592 GG GAG add_exon() Sorry, pasa_asmbl_54351.p1 77034-77216-terminal-1 is invalid. -recovered pasa_asmbl_54351.p1, terminal, 77034, 77216 -recovered pasa_asmbl_54351.p1, terminal, 79471, 79592 -recovered pasa_asmbl_54351.p1, internal, 75752, 75988 -recovered pasa_asmbl_54351.p1, internal, 76151, 76217 -recovered pasa_asmbl_54351.p1, internal, 76296, 76427 -recovered pasa_asmbl_54351.p1, internal, 76575, 76674 -recovered pasa_asmbl_54351.p1, internal, 76817, 76903 -recovered pasa_asmbl_54351.p1, internal, 77034, 77216 -recovered pasa_asmbl_54351.p1, internal, 77346, 77426 -recovered pasa_asmbl_54351.p1, internal, 77610, 77767 -recovered pasa_asmbl_54351.p1, internal, 77985, 78099 -recovered pasa_asmbl_54351.p1, internal, 78315, 78423 -recovered pasa_asmbl_54351.p1, internal, 78583, 78677 -recovered pasa_asmbl_54351.p1, internal, 78760, 78829 -recovered pasa_asmbl_54351.p1, internal, 79032, 79260 Valid prediction for snap_scaffold_9-snap.2294-T1 Couldn't classify 222456, 222496 Sorry, prediction pasa_asmbl_54373.p1 fails validation. (AAC) AG 222456-222496 GT AGG (AGT) AG 222575-222680 GT TGG (GTC) AG 222799-222904 GT ATG (CTA) AG 223011-223079 GT GGG (GAT) AG 223203-223207 CC AGC -recovered pasa_asmbl_54373.p1, terminal, 223203, 223207 -recovered pasa_asmbl_54373.p1, internal, 222456, 222496 -recovered pasa_asmbl_54373.p1, internal, 222575, 222680 -recovered pasa_asmbl_54373.p1, internal, 222799, 222904 -recovered pasa_asmbl_54373.p1, internal, 223011, 223079 Valid prediction for snap_scaffold_9-snap.2297-T1 Valid prediction for snap_scaffold_9-snap.2336-T1 Valid prediction for CodingQuarry_transcript_62169-T1 Valid prediction for GeneMark_model.40079_t Valid prediction for GeneMark_model.40094_t Valid prediction for Augustus_model.g15715.t1 Valid prediction for GlimmerHMM_glimmerT_23463-T1 Valid prediction for CodingQuarry_transcript_62187-T1 Valid prediction for GeneMark_model.40076_t Valid prediction for snap_scaffold_9-snap.2301-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_9-snap.2325-T1 Valid prediction for GlimmerHMM_glimmerT_23456-T1 Valid prediction for GeneMark_model.40074_t Couldn't classify 33338, 33512 Sorry, prediction pasa_asmbl_55305.p1 fails validation. (GAG) CG 33338-33512 GT AGG (ACC) AG 33631-33770 GT AGG (GTT) AG 33989-34170 GT GAG (GCT) AG 34252-34508 GT AGG (GTC) AG 34597-34723 GT CAG (GCT) AG 34955-35071 GT AGG (GTA) AG 35215-35539 CC GAC -recovered pasa_asmbl_55305.p1, terminal, 35215, 35539 -recovered pasa_asmbl_55305.p1, internal, 33631, 33770 -recovered pasa_asmbl_55305.p1, internal, 33989, 34170 -recovered pasa_asmbl_55305.p1, internal, 34252, 34508 -recovered pasa_asmbl_55305.p1, internal, 34597, 34723 -recovered pasa_asmbl_55305.p1, internal, 34955, 35071 Valid prediction for CodingQuarry_transcript_62176-T1 Valid prediction for GlimmerHMM_glimmerT_23459-T1 Valid prediction for snap_scaffold_9-snap.2333-T1 Valid prediction for GlimmerHMM_glimmerT_23432-T1 Valid prediction for GeneMark_model.40089_t Valid prediction for pasa_asmbl_55299.p1 Valid prediction for GeneMark_model.40082_t Valid prediction for CodingQuarry_transcript_62181-T1 Valid prediction for Augustus_model.g15711.t1 Valid prediction for snap_scaffold_9-snap.2303-T1 Valid prediction for GlimmerHMM_glimmerT_23446-T1 Valid prediction for snap_scaffold_9-snap.2318-T1 Valid prediction for Augustus_model.g15720.t1 Valid prediction for GlimmerHMM_glimmerT_23460-T1 Valid prediction for GlimmerHMM_glimmerT_23458-T1 Valid prediction for HiQ_model.g15718.t1 Valid prediction for Augustus_model.g15700.t1 Valid prediction for GeneMark_model.40100_t Valid prediction for GeneMark_model.40086_t Valid prediction for snap_scaffold_9-snap.2316-T1 Valid prediction for CodingQuarry_transcript_62184-T1 Valid prediction for GeneMark_model.40093_t Valid prediction for GlimmerHMM_glimmerT_23441-T1 Valid prediction for CodingQuarry_transcript_62174-T1 Valid prediction for GlimmerHMM_glimmerT_23452-T1 Valid prediction for GeneMark_model.40085_t Valid prediction for GeneMark_model.40088_t Valid prediction for snap_scaffold_9-snap.2342-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_9-snap.2324-T1 Valid prediction for GlimmerHMM_glimmerT_23429-T1 Valid prediction for GlimmerHMM_glimmerT_23440-T1 Valid prediction for Augustus_model.g15703.t1 Valid prediction for GlimmerHMM_glimmerT_23451-T1 Valid prediction for HiQ_model.g15721.t1 Valid prediction for snap_scaffold_9-snap.2339-T1 Valid prediction for HiQ_model.g15725.t1 Valid prediction for pasa_asmbl_55280.p1 Valid prediction for GlimmerHMM_glimmerT_23450-T1 Valid prediction for snap_scaffold_9-snap.2313-T1 Valid prediction for CodingQuarry_transcript_62185-T1 Valid prediction for snap_scaffold_9-snap.2314-T1 Valid prediction for HiQ_model.g15723.t1 Couldn't classify 66374, 66927 Couldn't classify 66949, 67078 Sorry, prediction CodingQuarry_transcript_62179-T1 fails validation. (ATG) AC 66374-66927 AG CCA (TGT) CC 66949-67078 GT ACG (AGT) AG 68289-68397 GT AGG (AGC) AG 68556-68822 GT AGG (TTG) AG 69023-69085 GT AGG (ACA) AG 69244-69301 GC AGG (GGT) AG 69487-69627 GT AGG (TAG) AG 69721-69844 GT AGG (AAT) AG 70039-70190 GT GAG (GGA) AG 70705-70831 TG GAT -recovered CodingQuarry_transcript_62179-T1, terminal, 70705, 70831 -recovered CodingQuarry_transcript_62179-T1, internal, 68289, 68397 -recovered CodingQuarry_transcript_62179-T1, internal, 68556, 68822 -recovered CodingQuarry_transcript_62179-T1, internal, 69023, 69085 -recovered CodingQuarry_transcript_62179-T1, internal, 69244, 69301 -recovered CodingQuarry_transcript_62179-T1, internal, 69487, 69627 -recovered CodingQuarry_transcript_62179-T1, internal, 69721, 69844 -recovered CodingQuarry_transcript_62179-T1, internal, 70039, 70190 Valid prediction for GlimmerHMM_glimmerT_23462-T1 Valid prediction for CodingQuarry_transcript_62182-T1 Valid prediction for snap_scaffold_9-snap.2317-T1 Valid prediction for GlimmerHMM_glimmerT_23461-T1 Valid prediction for GlimmerHMM_glimmerT_23433-T1 Valid prediction for HiQ_model.g15724.t1 Valid prediction for Augustus_model.g15731.t1 Valid prediction for snap_scaffold_9-snap.2295-T1 Valid prediction for pasa_asmbl_55289.p1 Couldn't classify 60003, 60078 Sorry, prediction pasa_asmbl_55285.p1 fails validation. (AAT) TG 60003-60078 GT AGG (CGA) AG 60453-60638 GT AGG (GTT) AG 60910-61173 GT AGG (CTG) AG 61370-61699 GT GGG (AGC) AG 61999-62328 GT TGG (AGC) AG 62709-62798 GT ATG (CTA) AG 62887-62906 GT AGG (AAC) AG 63000-63011 GG AAG -recovered pasa_asmbl_55285.p1, terminal, 63000, 63011 -recovered pasa_asmbl_55285.p1, internal, 60453, 60638 -recovered pasa_asmbl_55285.p1, internal, 60910, 61173 -recovered pasa_asmbl_55285.p1, internal, 61370, 61699 -recovered pasa_asmbl_55285.p1, internal, 61999, 62328 -recovered pasa_asmbl_55285.p1, internal, 62709, 62798 -recovered pasa_asmbl_55285.p1, internal, 62887, 62906 Valid prediction for CodingQuarry_transcript_62171-T1 Valid prediction for GeneMark_model.40095_t Valid prediction for pasa_asmbl_55301.p1 Valid prediction for snap_scaffold_9-snap.2296-T1 Valid prediction for snap_scaffold_9-snap.2322-T1 Valid prediction for GlimmerHMM_glimmerT_23455-T1 Valid prediction for CodingQuarry_transcript_62180-T1 Valid prediction for snap_scaffold_9-snap.2337-T1 Valid prediction for snap_scaffold_9-snap.2335-T1 Valid prediction for GeneMark_model.40080_t Valid prediction for snap_scaffold_9-snap.2299-T1 Valid prediction for Augustus_model.g15713.t1 Valid prediction for GlimmerHMM_glimmerT_23453-T1 Valid prediction for snap_scaffold_9-snap.2304-T1 Valid prediction for snap_scaffold_9-snap.2323-T1 Valid prediction for GeneMark_model.40070_t Couldn't classify 28643, 28718 Sorry, prediction pasa_asmbl_55307.p1 fails validation. (ACC) AC 28643-28718 GT AGG (GGG) AG 28802-28992 GT AGG (GAC) AG 29203-29418 GT AGG (GTG) AG 29558-29682 GT CTG (ATA) AG 29840-29930 GT AGG (TTG) AG 30050-30118 GT AGG (TTG) AG 30215-30320 GT AAG (GTG) AG 30521-30562 GT AGG (ATT) AG 30681-30685 GA GAG -recovered pasa_asmbl_55307.p1, terminal, 30681, 30685 -recovered pasa_asmbl_55307.p1, internal, 28802, 28992 -recovered pasa_asmbl_55307.p1, internal, 29203, 29418 -recovered pasa_asmbl_55307.p1, internal, 29558, 29682 -recovered pasa_asmbl_55307.p1, internal, 29840, 29930 -recovered pasa_asmbl_55307.p1, internal, 30050, 30118 -recovered pasa_asmbl_55307.p1, internal, 30215, 30320 -recovered pasa_asmbl_55307.p1, internal, 30521, 30562 Valid prediction for GlimmerHMM_glimmerT_23447-T1 Valid prediction for GlimmerHMM_glimmerT_23448-T1 Valid prediction for snap_scaffold_9-snap.2298-T1 Valid prediction for HiQ_model.g15719.t1 Valid prediction for GeneMark_model.40081_t Valid prediction for snap_scaffold_9-snap.2328-T1 Valid prediction for pasa_asmbl_55276.p1 Valid prediction for snap_scaffold_9-snap.2305-T1 Valid prediction for CodingQuarry_transcript_62175-T1 Valid prediction for pasa_asmbl_55268.p1 Valid prediction for snap_scaffold_9-snap.2302-T1 Valid prediction for Augustus_model.g15728.t1 Valid prediction for snap_scaffold_9-snap.2341-T1 Valid prediction for GeneMark_model.40092_t Valid prediction for CodingQuarry_transcript_62178-T1 Valid prediction for GlimmerHMM_glimmerT_23439-T1 Valid prediction for CodingQuarry_transcript_62172-T1 Valid prediction for CodingQuarry_transcript_62173-T1 Valid prediction for GeneMark_model.40098_t Valid prediction for snap_scaffold_9-snap.2331-T1 Sorry, intron length (4) is less than minimum required (10) Couldn't classify 86859, 87563 Sorry, prediction pasa_asmbl_55274.p1 fails validation. (GCC) CA 86859-87563 TT GAT Valid prediction for GlimmerHMM_glimmerT_23435-T1 Valid prediction for GeneMark_model.40090_t Valid prediction for snap_scaffold_9-snap.2332-T1 Valid prediction for GeneMark_model.40097_t Valid prediction for Augustus_model.g15704.t1 Couldn't classify 27122, 27197 Couldn't classify 28339, 28413 Sorry, prediction pasa_asmbl_55308.p1 fails validation. (TTG) CT 27122-27197 GT GGG (GAG) AG 27285-27461 GT CGG (GTT) AG 27755-27830 GT TGG (GCT) AG 27927-28083 GT AGG (GGA) AG 28339-28413 GT CGG -recovered pasa_asmbl_55308.p1, internal, 27285, 27461 -recovered pasa_asmbl_55308.p1, internal, 27755, 27830 -recovered pasa_asmbl_55308.p1, internal, 27927, 28083 -recovered pasa_asmbl_55308.p1, internal, 28339, 28413 Valid prediction for GeneMark_model.40087_t Valid prediction for GeneMark_model.40068_t Valid prediction for HiQ_model.g15729.t1 Valid prediction for GeneMark_model.40071_t Valid prediction for snap_scaffold_9-snap.2327-T1 Valid prediction for snap_scaffold_9-snap.2312-T1 Valid prediction for GlimmerHMM_glimmerT_23445-T1 Valid prediction for GeneMark_model.40096_t Valid prediction for GlimmerHMM_glimmerT_23457-T1 Valid prediction for HiQ_model.g15727.t1 Valid prediction for GeneMark_model.40102_t Valid prediction for pasa_asmbl_55273.p1 Valid prediction for Augustus_model.g15730.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 84601, rend_intergenic: 84598 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 17451, rend_intergenic: 15418 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25894, rend_intergenic: 22688 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177776, rend_intergenic: 169789 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182183, rend_intergenic: 178926 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197162, rend_intergenic: 193270 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215403, rend_intergenic: 210179 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227184, rend_intergenic: 221790 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235851, rend_intergenic: 228396 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 238152 -exon list size: 710 building trellis 0.1 0.3 0.4 0.6 0.7 0.8 1.0 1.1 1.3 1.4 1.5 1.7 1.8 2.0 2.1 2.2 2.4 2.5 2.7 2.8 2.9 3.1 3.2 3.4 3.5 3.7 3.8 3.9 4.1 4.2 4.4 4.5 4.6 4.8 4.9 5.1 5.2 5.3 5.5 5.6 5.8 5.9 6.0 6.2 6.3 6.5 6.6 6.7 6.9 7.0 7.2 7.3 7.4 7.6 7.7 7.9 8.0 8.1 8.3 8.4 8.6 8.7 8.8 9.0 9.1 9.3 9.4 9.6 9.7 9.8 10.0 10.1 10.3 10.4 10.5 10.7 10.8 11.0 11.1 11.2 11.4 11.5 11.7 11.8 11.9 12.1 12.2 12.4 12.5 12.6 12.8 12.9 13.1 13.2 13.3 13.5 13.6 13.8 13.9 14.0 14.2 14.3 14.5 14.6 14.7 14.9 15.0 15.2 15.3 15.4 15.6 15.7 15.9 16.0 16.2 16.3 16.4 16.6 16.7 16.9 17.0 17.1 17.3 17.4 17.6 17.7 17.8 18.0 18.1 18.3 18.4 18.5 18.7 18.8 19.0 19.1 19.2 19.4 19.5 19.7 19.8 19.9 20.1 20.2 20.4 20.5 20.6 20.8 20.9 21.1 21.2 21.3 21.5 21.6 21.8 21.9 22.1 22.2 22.3 22.5 22.6 22.8 22.9 23.0 23.2 23.3 23.5 23.6 23.7 23.9 24.0 24.2 24.3 24.4 24.6 24.7 24.9 25.0 25.1 25.3 25.4 25.6 25.7 25.8 26.0 26.1 26.3 26.4 26.5 26.7 26.8 27.0 27.1 27.2 27.4 27.5 27.7 27.8 27.9 28.1 28.2 28.4 28.5 28.7 28.8 28.9 29.1 29.2 29.4 29.5 29.6 29.8 29.9 30.1 30.2 30.3 30.5 30.6 30.8 30.9 31.0 31.2 31.3 31.5 31.6 31.7 31.9 32.0 32.2 32.3 32.4 32.6 32.7 32.9 33.0 33.1 33.3 33.4 33.6 33.7 33.8 34.0 34.1 34.3 34.4 34.6 34.7 34.8 35.0 35.1 35.3 35.4 35.5 35.7 35.8 36.0 36.1 36.2 36.4 36.5 36.7 36.8 36.9 37.1 37.2 37.4 37.5 37.6 37.8 37.9 38.1 38.2 38.3 38.5 38.6 38.8 38.9 39.0 39.2 39.3 39.5 39.6 39.7 39.9 40.0 40.2 40.3 40.4 40.6 40.7 40.9 41.0 41.2 41.3 41.4 41.6 41.7 41.9 42.0 42.1 42.3 42.4 42.6 42.7 42.8 43.0 43.1 43.3 43.4 43.5 43.7 43.8 44.0 44.1 44.2 44.4 44.5 44.7 44.8 44.9 45.1 45.2 45.4 45.5 45.6 45.8 45.9 46.1 46.2 46.3 46.5 46.6 46.8 46.9 47.1 47.2 47.3 47.5 47.6 47.8 47.9 48.0 48.2 48.3 48.5 48.6 48.7 48.9 49.0 49.2 49.3 49.4 49.6 49.7 49.9 50.0 50.1 50.3 50.4 50.6 50.7 50.8 51.0 51.1 51.3 51.4 51.5 51.7 51.8 52.0 52.1 52.2 52.4 52.5 52.7 52.8 52.9 53.1 53.2 53.4 53.5 53.7 53.8 53.9 54.1 54.2 54.4 54.5 54.6 54.8 54.9 55.1 55.2 55.3 55.5 55.6 55.8 55.9 56.0 56.2 56.3 56.5 56.6 56.7 56.9 57.0 57.2 57.3 57.4 57.6 57.7 57.9 58.0 58.1 58.3 58.4 58.6 58.7 58.8 59.0 59.1 59.3 59.4 59.6 59.7 59.8 60.0 60.1 60.3 60.4 60.5 60.7 60.8 61.0 61.1 61.2 61.4 61.5 61.7 61.8 61.9 62.1 62.2 62.4 62.5 62.6 62.8 62.9 63.1 63.2 63.3 63.5 63.6 63.8 63.9 64.0 64.2 64.3 64.5 64.6 64.7 64.9 65.0 65.2 65.3 65.4 65.6 65.7 65.9 66.0 66.2 66.3 66.4 66.6 66.7 66.9 67.0 67.1 67.3 67.4 67.6 67.7 67.8 68.0 68.1 68.3 68.4 68.5 68.7 68.8 69.0 69.1 69.2 69.4 69.5 69.7 69.8 69.9 70.1 70.2 70.4 70.5 70.6 70.8 70.9 71.1 71.2 71.3 71.5 71.6 71.8 71.9 72.1 72.2 72.3 72.5 72.6 72.8 72.9 73.0 73.2 73.3 73.5 73.6 73.7 73.9 74.0 74.2 74.3 74.4 74.6 74.7 74.9 75.0 75.1 75.3 75.4 75.6 75.7 75.8 76.0 76.1 76.3 76.4 76.5 76.7 76.8 77.0 77.1 77.2 77.4 77.5 77.7 77.8 77.9 78.1 78.2 78.4 78.5 78.7 78.8 78.9 79.1 79.2 79.4 79.5 79.6 79.8 79.9 80.1 80.2 80.3 80.5 80.6 80.8 80.9 81.0 81.2 81.3 81.5 81.6 81.7 81.9 82.0 82.2 82.3 82.4 82.6 82.7 82.9 83.0 83.1 83.3 83.4 83.6 83.7 83.8 84.0 84.1 84.3 84.4 84.6 84.7 84.8 85.0 85.1 85.3 85.4 85.5 85.7 85.8 86.0 86.1 86.2 86.4 86.5 86.7 86.8 86.9 87.1 87.2 87.4 87.5 87.6 87.8 87.9 88.1 88.2 88.3 88.5 88.6 88.8 88.9 89.0 89.2 89.3 89.5 89.6 89.7 89.9 90.0 90.2 90.3 90.4 90.6 90.7 90.9 91.0 91.2 91.3 91.4 91.6 91.7 91.9 92.0 92.1 92.3 92.4 92.6 92.7 92.8 93.0 93.1 93.3 93.4 93.5 93.7 93.8 94.0 94.1 94.2 94.4 94.5 94.7 94.8 94.9 95.1 95.2 95.4 95.5 95.6 95.8 95.9 96.1 96.2 96.3 96.5 96.6 96.8 96.9 97.1 97.2 97.3 97.5 97.6 97.8 97.9 98.0 98.2 98.3 98.5 98.6 98.7 98.9 99.0 99.2 99.3 99.4 99.6 99.7 99.9 -found 41 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 84601, rend_intergenic: 84598 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 17451, rend_intergenic: 15418 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25894, rend_intergenic: 22688 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177776, rend_intergenic: 169789 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182183, rend_intergenic: 178926 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197162, rend_intergenic: 193270 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215403, rend_intergenic: 210179 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227184, rend_intergenic: 221790 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235851, rend_intergenic: 228396 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 38 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 14649 -exon list size: 16 building trellis 5.6 11.1 16.7 22.2 27.8 33.3 38.9 44.4 50.0 55.6 61.1 66.7 72.2 77.8 83.3 88.9 94.4 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 14480 -exon list size: 15 building trellis 5.9 11.8 17.6 23.5 29.4 35.3 41.2 47.1 52.9 58.8 64.7 70.6 76.5 82.4 88.2 94.1 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support