-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_10905066-11145148

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.39955_t
Valid prediction for snap_scaffold_9-snap.2174-T1
Valid prediction for GlimmerHMM_glimmerT_23356-T1
Valid prediction for snap_scaffold_9-snap.2205-T1
Valid prediction for GlimmerHMM_glimmerT_23364-T1
Valid prediction for GeneMark_model.39976_t
Valid prediction for GeneMark_model.39957_t
Couldn't classify 226383, 226475
Sorry, prediction pasa_asmbl_54320.p1 fails validation.
(ATG)	 AG	224834-224864	GT	AGG
(ATC)	 AG	225485-225596	GT	AGG
(CAG)	 AG	225823-225913	GT	AGG
(CTT)	 AG	226065-226172	GT	AGG
(GAC)	 AG	226383-226475	TG	AGT
-recovered pasa_asmbl_54320.p1, initial, 224834, 224864
-recovered pasa_asmbl_54320.p1, internal, 224834, 224864
-recovered pasa_asmbl_54320.p1, internal, 225485, 225596
-recovered pasa_asmbl_54320.p1, internal, 225823, 225913
-recovered pasa_asmbl_54320.p1, internal, 226065, 226172
Valid prediction for snap_scaffold_9-snap.2182-T1
Valid prediction for snap_scaffold_9-snap.2187-T1
Valid prediction for GeneMark_model.39977_t
Valid prediction for Augustus_model.g15630.t1
Valid prediction for snap_scaffold_9-snap.2170-T1
Valid prediction for Augustus_model.g15628.t1
Valid prediction for snap_scaffold_9-snap.2206-T1
Valid prediction for GlimmerHMM_glimmerT_23352-T1
Valid prediction for CodingQuarry_transcript_62140-T1
Valid prediction for HiQ_model.g15627.t1
Valid prediction for snap_scaffold_9-snap.2176-T1
Valid prediction for Augustus_model.g15632.t1
Valid prediction for GlimmerHMM_glimmerT_23365-T1
Valid prediction for snap_scaffold_9-snap.2198-T1
Valid prediction for GeneMark_model.39986_t
Valid prediction for GeneMark_model.39961_t
Couldn't classify 27712, 28026
Sorry, prediction pasa_asmbl_54301.p2 fails validation.
(GGC)	 TG	27712-28026	AT	AAA
Valid prediction for GeneMark_model.39959_t
Valid prediction for GeneMark_model.39950_t
Valid prediction for GeneMark_model.39980_t
Valid prediction for snap_scaffold_9-snap.2209-T1
Valid prediction for snap_scaffold_9-snap.2173-T1
Valid prediction for snap_scaffold_9-snap.2199-T1
Valid prediction for HiQ_model.g15639.t1
Valid prediction for HiQ_model.g15640.t1
Couldn't classify 128410, 128466
Couldn't classify 128887, 128931
Sorry, prediction pasa_asmbl_54310.p1 fails validation.
(ATC)	 CC	128410-128466	GT	AGG
(GTG)	 AG	128599-128805	GT	AGG
(GAT)	 AG	128887-128931	AC	CCA
-recovered pasa_asmbl_54310.p1, internal, 128599, 128805
Couldn't classify 17415, 17516
Sorry, prediction pasa_asmbl_54300.p1 fails validation.
(TAC)	 GT	17415-17516	GT	CGG
(ATG)	 AG	17845-18006	GT	AGG
(AGT)	 AG	18253-18484	GT	AGG
(GTA)	 AG	18629-18714	GT	AGG
(GAA)	 AG	18928-19136	GT	CGG
(ACG)	 AG	19422-19539	GT	AGG
(GAA)	 AG	19798-19939	GT	TGG
(CCC)	 AG	20117-20283	GT	AGG
(CTG)	 AG	20555-20654	GT	CGG
(GGA)	 AG	21094-21332	GT	AGG
(AGG)	 AG	22973-22993	AG	GAA
-recovered pasa_asmbl_54300.p1, initial, 17845, 18006
-recovered pasa_asmbl_54300.p1, terminal, 22973, 22993
-recovered pasa_asmbl_54300.p1, internal, 17845, 18006
-recovered pasa_asmbl_54300.p1, internal, 18253, 18484
-recovered pasa_asmbl_54300.p1, internal, 18629, 18714
-recovered pasa_asmbl_54300.p1, internal, 18928, 19136
-recovered pasa_asmbl_54300.p1, internal, 19422, 19539
-recovered pasa_asmbl_54300.p1, internal, 19798, 19939
-recovered pasa_asmbl_54300.p1, internal, 20117, 20283
-recovered pasa_asmbl_54300.p1, internal, 20555, 20654
-recovered pasa_asmbl_54300.p1, internal, 21094, 21332
Valid prediction for GeneMark_model.39975_t
Valid prediction for Augustus_model.g15629.t1
Valid prediction for snap_scaffold_9-snap.2172-T1
Couldn't classify 217744, 217826
Couldn't classify 221282, 221458
Sorry, prediction pasa_asmbl_54318.p1 fails validation.
(CAC)	 AC	217744-217826	GT	GGG
(ATA)	 AG	218117-218419	GT	AGG
(TTT)	 AG	218997-219192	GT	GGG
(TTG)	 AG	219402-219537	GT	TGG
(GTA)	 AG	220086-220232	GT	AGG
(TGG)	 AG	220525-220623	GT	GAG
(TGG)	 AG	220758-220822	GT	AGG
(GAC)	 AG	220976-221107	GT	AGG
(GTC)	 AG	221282-221458	CG	AAC
-recovered pasa_asmbl_54318.p1, internal, 218117, 218419
-recovered pasa_asmbl_54318.p1, internal, 218997, 219192
-recovered pasa_asmbl_54318.p1, internal, 219402, 219537
-recovered pasa_asmbl_54318.p1, internal, 220086, 220232
-recovered pasa_asmbl_54318.p1, internal, 220525, 220623
-recovered pasa_asmbl_54318.p1, internal, 220758, 220822
-recovered pasa_asmbl_54318.p1, internal, 220976, 221107
Couldn't classify 49366, 50241
Sorry, prediction pasa_asmbl_54303.p2 fails validation.
(ATG)	 CC	49366-50241	TA	AGT
Valid prediction for GeneMark_model.39968_t
Valid prediction for GlimmerHMM_glimmerT_23363-T1
Valid prediction for GlimmerHMM_glimmerT_23337-T1
Valid prediction for Augustus_model.g15646.t1
Valid prediction for snap_scaffold_9-snap.2177-T1
Couldn't classify 128992, 129050
Couldn't classify 129434, 129625
Sorry, prediction pasa_asmbl_54311.p1 fails validation.
(TAC)	 CC	128992-129050	GT	AGG
(TGT)	 AG	129139-129265	GT	AGG
(GTG)	 AG	129434-129625	GG	AAG
-recovered pasa_asmbl_54311.p1, internal, 129139, 129265
Valid prediction for snap_scaffold_9-snap.2195-T1
Valid prediction for snap_scaffold_9-snap.2185-T1
Valid prediction for GlimmerHMM_glimmerT_23344-T1
Valid prediction for pasa_asmbl_54307.p1
Valid prediction for GeneMark_model.39982_t
Valid prediction for GeneMark_model.39984_t
Couldn't classify 125906, 126024
Couldn't classify 127135, 127303
Sorry, prediction pasa_asmbl_54309.p1 fails validation.
(GAC)	 AG	125906-126024	GT	TGG
(GTA)	 AG	126122-126227	GT	AAG
(AGC)	 AG	126540-126730	GT	TGG
(GTA)	 AG	126916-127035	GT	AGG
(GTA)	 AG	127135-127303	GT	CCG
-recovered pasa_asmbl_54309.p1, internal, 125906, 126024
-recovered pasa_asmbl_54309.p1, internal, 126122, 126227
-recovered pasa_asmbl_54309.p1, internal, 126540, 126730
-recovered pasa_asmbl_54309.p1, internal, 126916, 127035
-recovered pasa_asmbl_54309.p1, internal, 127135, 127303
Valid prediction for GlimmerHMM_glimmerT_23336-T1
Valid prediction for GeneMark_model.39953_t
Valid prediction for GlimmerHMM_glimmerT_23349-T1
Valid prediction for snap_scaffold_9-snap.2208-T1
Valid prediction for GlimmerHMM_glimmerT_23362-T1
Valid prediction for GeneMark_model.39956_t
Valid prediction for HiQ_model.g15643.t1
Couldn't classify 24810, 24900
Couldn't classify 26572, 26604
Sorry, prediction pasa_asmbl_54704.p1 fails validation.
(CCA)	 AA	24810-24900	GT	TGG
(GCA)	 AG	25343-25428	GT	AGG
(GAA)	 AG	25739-25947	GT	AGG
(ACG)	 AG	26223-26340	GT	TCG
(GAA)	 AG	26572-26604	GA	CAG
-recovered pasa_asmbl_54704.p1, internal, 25343, 25428
-recovered pasa_asmbl_54704.p1, internal, 25739, 25947
-recovered pasa_asmbl_54704.p1, internal, 26223, 26340
Valid prediction for Augustus_model.g15648.t1
Valid prediction for GeneMark_model.39966_t
Valid prediction for GeneMark_model.39969_t
Valid prediction for GeneMark_model.39967_t
Valid prediction for snap_scaffold_9-snap.2189-T1
Valid prediction for snap_scaffold_9-snap.2196-T1
Valid prediction for GlimmerHMM_glimmerT_23358-T1
Valid prediction for GlimmerHMM_glimmerT_23353-T1
Valid prediction for HiQ_model.g15651.t1
Valid prediction for Augustus_model.g15652.t1
Valid prediction for GlimmerHMM_glimmerT_23350-T1
Valid prediction for GeneMark_model.39983_t
Valid prediction for snap_scaffold_9-snap.2193-T1
Valid prediction for GeneMark_model.39952_t
Valid prediction for GeneMark_model.39974_t
Valid prediction for pasa_asmbl_54314.p1
Couldn't classify 210183, 210379
Couldn't classify 210852, 210960
Sorry, prediction pasa_asmbl_54756.p1 fails validation.
(TAC)	 TC	210183-210379	GT	AAG
(GTT)	 AG	210852-210960	AA	ACA
Valid prediction for CodingQuarry_transcript_62145-T1
Valid prediction for snap_scaffold_9-snap.2178-T1
Valid prediction for snap_scaffold_9-snap.2191-T1
Valid prediction for GeneMark_model.39951_t
Valid prediction for snap_scaffold_9-snap.2190-T1
Couldn't classify 131050, 131088
Sorry, prediction pasa_asmbl_54313.p1 fails validation.
(TTC)	 AG	131050-131088	GT	AGG
(GTA)	 AG	131195-131311	GT	AGG
(ATT)	 AG	131406-131653	GT	AGG
(GTG)	 AG	131844-132023	GT	AGG
(GCG)	 AG	132155-132290	GT	AGG
(GTT)	 AG	132446-132615	GT	TGG
(GGA)	 AG	132815-132944	GT	ACG
(GTG)	 AG	133086-133232	GT	AGG
(GTG)	 AG	133348-133508	GT	AAG
(GGA)	 AG	133716-133907	GT	AGG
(CGG)	 AG	134153-134390	GT	AGG
(ACC)	 AG	134631-134759	GT	AGG
(CTG)	 AG	134856-134969	GT	AGG
(GTC)	 AG	135115-135288	GT	CGG
(GCG)	 AG	135516-135709	GT	AAG
(TGT)	 AG	135899-136138	GT	AGG
(GGC)	 AG	136258-136399	GT	AGG
(ATT)	 AG	136521-136661	GT	AGG
(GAG)	 AG	136757-136896	GT	AGG
(TTT)	 AG	137166-137368	GT	GGG
(GTG)	 AG	137556-137710	GG	AAG
-recovered pasa_asmbl_54313.p1, terminal, 137556, 137710
-recovered pasa_asmbl_54313.p1, internal, 131050, 131088
-recovered pasa_asmbl_54313.p1, internal, 131195, 131311
-recovered pasa_asmbl_54313.p1, internal, 131406, 131653
-recovered pasa_asmbl_54313.p1, internal, 131844, 132023
-recovered pasa_asmbl_54313.p1, internal, 132155, 132290
-recovered pasa_asmbl_54313.p1, internal, 132446, 132615
-recovered pasa_asmbl_54313.p1, internal, 132815, 132944
-recovered pasa_asmbl_54313.p1, internal, 133086, 133232
-recovered pasa_asmbl_54313.p1, internal, 133348, 133508
-recovered pasa_asmbl_54313.p1, internal, 133716, 133907
-recovered pasa_asmbl_54313.p1, internal, 134153, 134390
-recovered pasa_asmbl_54313.p1, internal, 134631, 134759
-recovered pasa_asmbl_54313.p1, internal, 134856, 134969
-recovered pasa_asmbl_54313.p1, internal, 135115, 135288
-recovered pasa_asmbl_54313.p1, internal, 135516, 135709
-recovered pasa_asmbl_54313.p1, internal, 135899, 136138
-recovered pasa_asmbl_54313.p1, internal, 136258, 136399
-recovered pasa_asmbl_54313.p1, internal, 136521, 136661
-recovered pasa_asmbl_54313.p1, internal, 136757, 136896
-recovered pasa_asmbl_54313.p1, internal, 137166, 137368
Valid prediction for snap_scaffold_9-snap.2183-T1
Valid prediction for HiQ_model.g15654.t1
Valid prediction for GlimmerHMM_glimmerT_23338-T1
Couldn't classify 129841, 129984
Couldn't classify 131195, 131209
Sorry, prediction pasa_asmbl_54312.p1 fails validation.
(TGC)	 AG	129841-129984	GT	AGG
(GAC)	 AG	130213-130451	GT	AGG
(GTT)	 AG	130611-130757	GT	CTG
(CGG)	 AG	130878-131088	GT	AGG
(GTA)	 AG	131195-131209	AC	GGA
-recovered pasa_asmbl_54312.p1, internal, 129841, 129984
-recovered pasa_asmbl_54312.p1, internal, 130213, 130451
-recovered pasa_asmbl_54312.p1, internal, 130611, 130757
-recovered pasa_asmbl_54312.p1, internal, 130878, 131088
Valid prediction for GlimmerHMM_glimmerT_23339-T1
Valid prediction for GeneMark_model.39981_t
Valid prediction for GlimmerHMM_glimmerT_23361-T1
Valid prediction for Augustus_model.g15647.t1
Valid prediction for snap_scaffold_9-snap.2180-T1
Valid prediction for snap_scaffold_9-snap.2175-T1
Valid prediction for GlimmerHMM_glimmerT_23348-T1
Couldn't classify 124955, 125117
Sorry, prediction pasa_asmbl_54308.p1 fails validation.
(ATG)	 CC	124483-124591	GT	AGG
(CAA)	 AG	124686-124854	GT	GGG
(AGC)	 AG	124955-125117	GG	GGG
-recovered pasa_asmbl_54308.p1, initial, 124483, 124591
-recovered pasa_asmbl_54308.p1, internal, 124686, 124854
Couldn't classify 148928, 148937
Sorry, prediction pasa_asmbl_54315.p2 fails validation.
(ATG)	 AA	146573-146670	GT	AGG
(AGA)	 AG	146818-146879	GT	ACG
(CCG)	 AG	147015-147116	GT	GCG
(GCT)	 AG	147392-147929	GT	AGG
(CTG)	 AG	148146-148364	GT	AAG
(CTG)	 AG	148535-148663	GT	AGG
(CTG)	 AG	148928-148937	AC	GCA
-recovered pasa_asmbl_54315.p2, initial, 146573, 146670
add_exon() Sorry, pasa_asmbl_54315.p2 148146-148364-terminal-1 is invalid.
-recovered pasa_asmbl_54315.p2, terminal, 148146, 148364
-recovered pasa_asmbl_54315.p2, internal, 146818, 146879
-recovered pasa_asmbl_54315.p2, internal, 147015, 147116
-recovered pasa_asmbl_54315.p2, internal, 147392, 147929
-recovered pasa_asmbl_54315.p2, internal, 148146, 148364
-recovered pasa_asmbl_54315.p2, internal, 148535, 148663
Couldn't classify 148983, 149034
Sorry, prediction pasa_asmbl_54316.p1 fails validation.
(GAC)	 GT	148983-149034	GT	CAG
(GTG)	 AG	149219-149330	GT	AGG
(GGT)	 AG	149411-149538	GT	AGG
(TTT)	 AG	149693-149830	GT	AGG
(ACA)	 AG	150125-151266	CA	AAC
-recovered pasa_asmbl_54316.p1, terminal, 150125, 151266
-recovered pasa_asmbl_54316.p1, internal, 149219, 149330
-recovered pasa_asmbl_54316.p1, internal, 149411, 149538
-recovered pasa_asmbl_54316.p1, internal, 149693, 149830
Valid prediction for HiQ_model.g15637.t1
Valid prediction for Augustus_model.g15653.t1
Valid prediction for snap_scaffold_9-snap.2201-T1
Valid prediction for CodingQuarry_transcript_62143-T1
Valid prediction for pasa_asmbl_54294.p1
Valid prediction for CodingQuarry_transcript_62139-T1
Valid prediction for Augustus_model.g15641.t1
Valid prediction for GeneMark_model.39971_t
Valid prediction for GlimmerHMM_glimmerT_23347-T1
Valid prediction for GlimmerHMM_glimmerT_23357-T1
Valid prediction for snap_scaffold_9-snap.2207-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.39954_t
Valid prediction for pasa_asmbl_55230.p1
Valid prediction for Augustus_model.g15638.t1
Valid prediction for GlimmerHMM_glimmerT_23340-T1
Valid prediction for GlimmerHMM_glimmerT_23342-T1
Valid prediction for GlimmerHMM_glimmerT_23355-T1
Valid prediction for Augustus_model.g15650.t1
Valid prediction for snap_scaffold_9-snap.2192-T1
Valid prediction for GeneMark_model.39964_t
Valid prediction for CodingQuarry_transcript_62144-T1
Valid prediction for GlimmerHMM_glimmerT_23343-T1
Valid prediction for GeneMark_model.39972_t
Valid prediction for GlimmerHMM_glimmerT_23341-T1
Valid prediction for Augustus_model.g15649.t1
Valid prediction for snap_scaffold_9-snap.2204-T1
Valid prediction for Augustus_model.g15631.t1
Valid prediction for GlimmerHMM_glimmerT_23345-T1
Valid prediction for GeneMark_model.39962_t
Valid prediction for snap_scaffold_9-snap.2184-T1
Valid prediction for HiQ_model.g15636.t1
Valid prediction for GlimmerHMM_glimmerT_23351-T1
Valid prediction for Augustus_model.g15633.t1
Valid prediction for Augustus_model.g15634.t1
Valid prediction for Augustus_model.g15645.t1
Valid prediction for snap_scaffold_9-snap.2210-T1
Valid prediction for snap_scaffold_9-snap.2197-T1
Valid prediction for GeneMark_model.39985_t
Valid prediction for snap_scaffold_9-snap.2200-T1
Valid prediction for GeneMark_model.39963_t
Valid prediction for GeneMark_model.39960_t
Valid prediction for GlimmerHMM_glimmerT_23346-T1
Valid prediction for snap_scaffold_9-snap.2171-T1
Valid prediction for snap_scaffold_9-snap.2181-T1
Valid prediction for GeneMark_model.39965_t
Valid prediction for GeneMark_model.39979_t
Valid prediction for snap_scaffold_9-snap.2179-T1
Valid prediction for HiQ_model.g15644.t1
Valid prediction for GlimmerHMM_glimmerT_23359-T1
Valid prediction for Augustus_model.g15642.t1
Valid prediction for pasa_asmbl_55233.p1
Valid prediction for GlimmerHMM_glimmerT_23366-T1
Valid prediction for GlimmerHMM_glimmerT_23354-T1
Valid prediction for Augustus_model.g15635.t1
Couldn't classify 75295, 75568
Sorry, prediction pasa_asmbl_55236.p1 fails validation.
(TAC)	 TC	75295-75568	GT	AGG
(GGT)	 AG	75886-75969	GT	AGG
(GGG)	 AG	76222-76378	GT	GGG
(GAT)	 AG	76552-76609	TG	GAT
-recovered pasa_asmbl_55236.p1, terminal, 76552, 76609
-recovered pasa_asmbl_55236.p1, internal, 75886, 75969
-recovered pasa_asmbl_55236.p1, internal, 76222, 76378
Valid prediction for snap_scaffold_9-snap.2188-T1
Valid prediction for GeneMark_model.39958_t
Couldn't classify 75090, 75201
Sorry, prediction pasa_asmbl_55238.p1 fails validation.
(ATG)	 TT	74062-74376	GT	AGG
(GAA)	 AG	74602-74993	GT	GGG
(GTA)	 AG	75090-75201	CC	CCC
-recovered pasa_asmbl_55238.p1, initial, 74062, 74376
-recovered pasa_asmbl_55238.p1, internal, 74602, 74993
Valid prediction for snap_scaffold_9-snap.2202-T1
Valid prediction for GlimmerHMM_glimmerT_23360-T1
Valid prediction for snap_scaffold_9-snap.2186-T1
Valid prediction for CodingQuarry_transcript_62142-T1
Valid prediction for GeneMark_model.39970_t
Valid prediction for GeneMark_model.39978_t
Valid prediction for snap_scaffold_9-snap.2194-T1
Valid prediction for snap_scaffold_9-snap.2203-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8154, rend_intergenic: 3369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75739, rend_intergenic: 72890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93276, rend_intergenic: 92161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106673, rend_intergenic: 102237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144695, rend_intergenic: 141375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 240083
-exon list size: 596


building trellis

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20.1    
20.2    
20.4    
20.6    
20.7    
20.9    
21.1    
21.2    
21.4    
21.6    
21.7    
21.9    
22.1    
22.2    
22.4    
22.6    
22.7    
22.9    
23.1    
23.2    
23.4    
23.6    
23.7    
23.9    
24.1    
24.2    
24.4    
24.6    
24.7    
24.9    
25.1    
25.3    
25.4    
25.6    
25.8    
25.9    
26.1    
26.3    
26.4    
26.6    
26.8    
26.9    
27.1    
27.3    
27.4    
27.6    
27.8    
27.9    
28.1    
28.3    
28.4    
28.6    
28.8    
28.9    
29.1    
29.3    
29.4    
29.6    
29.8    
29.9    
30.1    
30.3    
30.4    
30.6    
30.8    
30.9    
31.1    
31.3    
31.4    
31.6    
31.8    
31.9    
32.1    
32.3    
32.4    
32.6    
32.8    
32.9    
33.1    
33.3    
33.4    
33.6    
33.8    
33.9    
34.1    
34.3    
34.4    
34.6    
34.8    
34.9    
35.1    
35.3    
35.5    
35.6    
35.8    
36.0    
36.1    
36.3    
36.5    
36.6    
36.8    
37.0    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.1    
38.3    
38.5    
38.6    
38.8    
39.0    
39.1    
39.3    
39.5    
39.6    
39.8    
40.0    
40.1    
40.3    
40.5    
40.6    
40.8    
41.0    
41.1    
41.3    
41.5    
41.6    
41.8    
42.0    
42.1    
42.3    
42.5    
42.6    
42.8    
43.0    
43.1    
43.3    
43.5    
43.6    
43.8    
44.0    
44.1    
44.3    
44.5    
44.6    
44.8    
45.0    
45.2    
45.3    
45.5    
45.7    
45.8    
46.0    
46.2    
46.3    
46.5    
46.7    
46.8    
47.0    
47.2    
47.3    
47.5    
47.7    
47.8    
48.0    
48.2    
48.3    
48.5    
48.7    
48.8    
49.0    
49.2    
49.3    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.7    
50.8    
51.0    
51.2    
51.3    
51.5    
51.7    
51.8    
52.0    
52.2    
52.3    
52.5    
52.7    
52.8    
53.0    
53.2    
53.3    
53.5    
53.7    
53.8    
54.0    
54.2    
54.3    
54.5    
54.7    
54.8    
55.0    
55.2    
55.4    
55.5    
55.7    
55.9    
56.0    
56.2    
56.4    
56.5    
56.7    
56.9    
57.0    
57.2    
57.4    
57.5    
57.7    
57.9    
58.0    
58.2    
58.4    
58.5    
58.7    
58.9    
59.0    
59.2    
59.4    
59.5    
59.7    
59.9    
60.0    
60.2    
60.4    
60.5    
60.7    
60.9    
61.0    
61.2    
61.4    
61.5    
61.7    
61.9    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.0    
63.2    
63.4    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.5    
64.7    
64.9    
65.1    
65.2    
65.4    
65.6    
65.7    
65.9    
66.1    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.6    
67.7    
67.9    
68.1    
68.2    
68.4    
68.6    
68.7    
68.9    
69.1    
69.2    
69.4    
69.6    
69.7    
69.9    
70.1    
70.2    
70.4    
70.6    
70.7    
70.9    
71.1    
71.2    
71.4    
71.6    
71.7    
71.9    
72.1    
72.2    
72.4    
72.6    
72.7    
72.9    
73.1    
73.2    
73.4    
73.6    
73.7    
73.9    
74.1    
74.2    
74.4    
74.6    
74.7    
74.9    
75.1    
75.3    
75.4    
75.6    
75.8    
75.9    
76.1    
76.3    
76.4    
76.6    
76.8    
76.9    
77.1    
77.3    
77.4    
77.6    
77.8    
77.9    
78.1    
78.3    
78.4    
78.6    
78.8    
78.9    
79.1    
79.3    
79.4    
79.6    
79.8    
79.9    
80.1    
80.3    
80.4    
80.6    
80.8    
80.9    
81.1    
81.3    
81.4    
81.6    
81.8    
81.9    
82.1    
82.3    
82.4    
82.6    
82.8    
82.9    
83.1    
83.3    
83.4    
83.6    
83.8    
83.9    
84.1    
84.3    
84.4    
84.6    
84.8    
84.9    
85.1    
85.3    
85.5    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.6    
86.8    
87.0    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.1    
88.3    
88.5    
88.6    
88.8    
89.0    
89.1    
89.3    
89.5    
89.6    
89.8    
90.0    
90.1    
90.3    
90.5    
90.6    
90.8    
91.0    
91.1    
91.3    
91.5    
91.6    
91.8    
92.0    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.1    
93.3    
93.5    
93.6    
93.8    
94.0    
94.1    
94.3    
94.5    
94.6    
94.8    
95.0    
95.2    
95.3    
95.5    
95.7    
95.8    
96.0    
96.2    
96.3    
96.5    
96.7    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 8154, rend_intergenic: 3369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75739, rend_intergenic: 72890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93276, rend_intergenic: 92161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106673, rend_intergenic: 102237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144695, rend_intergenic: 141375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 32 predictions persist after filtering for low support