-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_10657040-10908433

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.2128-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_23329-T1
Valid prediction for snap_scaffold_9-snap.2166-T1
Valid prediction for GeneMark_model.39905_t
Valid prediction for snap_scaffold_9-snap.2127-T1
Couldn't classify 211157, 211319
Couldn't classify 212634, 212777
Sorry, prediction pasa_asmbl_54282.p1 fails validation.
(CTG)	 CT	211157-211319	GT	TGG
(TTT)	 AG	211529-211707	GT	AGG
(GCC)	 AG	212400-212540	GT	CGG
(GTG)	 AG	212634-212777	CA	CCC
-recovered pasa_asmbl_54282.p1, internal, 211529, 211707
-recovered pasa_asmbl_54282.p1, internal, 212400, 212540
Valid prediction for Augustus_model.g15623.t1
Valid prediction for snap_scaffold_9-snap.2120-T1
Valid prediction for GlimmerHMM_glimmerT_23322-T1
Valid prediction for snap_scaffold_9-snap.2146-T1
Valid prediction for GlimmerHMM_glimmerT_23331-T1
Valid prediction for snap_scaffold_9-snap.2154-T1
Valid prediction for Augustus_model.g15616.t1
Valid prediction for GeneMark_model.39932_t
Valid prediction for snap_scaffold_9-snap.2134-T1
Valid prediction for pasa_asmbl_54280.p1
Valid prediction for GeneMark_model.39931_t
Valid prediction for GlimmerHMM_glimmerT_23324-T1
Valid prediction for GeneMark_model.39912_t
Valid prediction for GeneMark_model.39914_t
Valid prediction for snap_scaffold_9-snap.2162-T1
Valid prediction for GeneMark_model.39907_t
Valid prediction for snap_scaffold_9-snap.2139-T1
Valid prediction for snap_scaffold_9-snap.2122-T1
Valid prediction for GeneMark_model.39933_t
Valid prediction for GeneMark_model.39903_t
Valid prediction for GeneMark_model.39904_t
Valid prediction for GeneMark_model.39895_t
Valid prediction for snap_scaffold_9-snap.2165-T1
Valid prediction for snap_scaffold_9-snap.2144-T1
Valid prediction for Augustus_model.g15625.t1
Valid prediction for snap_scaffold_9-snap.2167-T1
Valid prediction for GeneMark_model.39945_t
Valid prediction for GlimmerHMM_glimmerT_23314-T1
Valid prediction for snap_scaffold_9-snap.2133-T1
Valid prediction for CodingQuarry_transcript_62137-T1
Valid prediction for snap_scaffold_9-snap.2132-T1
Valid prediction for snap_scaffold_9-snap.2131-T1
Valid prediction for GlimmerHMM_glimmerT_23333-T1
Valid prediction for GeneMark_model.39909_t
Valid prediction for snap_scaffold_9-snap.2136-T1
Valid prediction for GeneMark_model.39930_t
Valid prediction for GeneMark_model.39920_t
Valid prediction for GlimmerHMM_glimmerT_23311-T1
Valid prediction for snap_scaffold_9-snap.2160-T1
Valid prediction for GeneMark_model.39927_t
Valid prediction for Augustus_model.g15611.t1
Valid prediction for GeneMark_model.39923_t
Couldn't classify 214559, 214735
Couldn't classify 215746, 215846
Sorry, prediction pasa_asmbl_54283.p1 fails validation.
(CCC)	 AG	214559-214735	GT	AGG
(AAC)	 AG	214854-214935	GT	GGG
(TCC)	 AG	215119-215193	GT	AGG
(TCC)	 AG	215746-215846	TA	AGT
-recovered pasa_asmbl_54283.p1, internal, 214559, 214735
-recovered pasa_asmbl_54283.p1, internal, 214854, 214935
-recovered pasa_asmbl_54283.p1, internal, 215119, 215193
Couldn't classify 220837, 221053
Couldn't classify 221481, 221896
Sorry, prediction pasa_asmbl_54284.p2 fails validation.
(CTG)	 AC	220837-221053	GT	AGG
(CCT)	 AG	221481-221896	GA	TTG
Valid prediction for GeneMark_model.39940_t
Valid prediction for snap_scaffold_9-snap.2168-T1
Valid prediction for GeneMark_model.39902_t
Valid prediction for GeneMark_model.39925_t
Valid prediction for snap_scaffold_9-snap.2125-T1
Valid prediction for GeneMark_model.39938_t
Valid prediction for snap_scaffold_9-snap.2152-T1
Valid prediction for Augustus_model.g15618.t1
Valid prediction for GeneMark_model.39942_t
Valid prediction for Augustus_model.g15624.t1
Valid prediction for snap_scaffold_9-snap.2153-T1
Valid prediction for GeneMark_model.39944_t
Valid prediction for snap_scaffold_9-snap.2151-T1
Valid prediction for GeneMark_model.39935_t
Valid prediction for GlimmerHMM_glimmerT_23318-T1
Valid prediction for GeneMark_model.39897_t
Valid prediction for GeneMark_model.39946_t
Valid prediction for GeneMark_model.39921_t
Valid prediction for GlimmerHMM_glimmerT_23316-T1
Valid prediction for snap_scaffold_9-snap.2163-T1
Valid prediction for snap_scaffold_9-snap.2149-T1
Valid prediction for HiQ_model.g15621.t1
Valid prediction for snap_scaffold_9-snap.2158-T1
Valid prediction for GlimmerHMM_glimmerT_23334-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g15619.t1
Valid prediction for snap_scaffold_9-snap.2142-T1
Valid prediction for Augustus_model.g15609.t1
Valid prediction for snap_scaffold_9-snap.2118-T1
Valid prediction for pasa_asmbl_55225.p1
Valid prediction for GlimmerHMM_glimmerT_23327-T1
Valid prediction for GeneMark_model.39943_t
Valid prediction for GlimmerHMM_glimmerT_23313-T1
Valid prediction for GeneMark_model.39928_t
Valid prediction for GlimmerHMM_glimmerT_23328-T1
Valid prediction for GeneMark_model.39941_t
Valid prediction for snap_scaffold_9-snap.2147-T1
Valid prediction for snap_scaffold_9-snap.2130-T1
Valid prediction for snap_scaffold_9-snap.2121-T1
Valid prediction for GeneMark_model.39910_t
Valid prediction for snap_scaffold_9-snap.2116-T1
Valid prediction for snap_scaffold_9-snap.2129-T1
Valid prediction for Augustus_model.g15622.t1
Valid prediction for GlimmerHMM_glimmerT_23317-T1
Valid prediction for GeneMark_model.39913_t
Valid prediction for GeneMark_model.39906_t
Valid prediction for snap_scaffold_9-snap.2143-T1
Valid prediction for snap_scaffold_9-snap.2164-T1
Valid prediction for snap_scaffold_9-snap.2124-T1
Valid prediction for Augustus_model.g15614.t1
Valid prediction for CodingQuarry_transcript_62136-T1
Valid prediction for GeneMark_model.39908_t
Valid prediction for GeneMark_model.39900_t
Valid prediction for snap_scaffold_9-snap.2140-T1
Valid prediction for Augustus_model.g15615.t1
Valid prediction for snap_scaffold_9-snap.2157-T1
Valid prediction for Augustus_model.g15612.t1
Valid prediction for GeneMark_model.39894_t
Valid prediction for GeneMark_model.39899_t
Valid prediction for snap_scaffold_9-snap.2145-T1
Valid prediction for snap_scaffold_9-snap.2169-T1
Valid prediction for GlimmerHMM_glimmerT_23320-T1
Valid prediction for GeneMark_model.39937_t
Valid prediction for snap_scaffold_9-snap.2161-T1
Valid prediction for GlimmerHMM_glimmerT_23325-T1
Valid prediction for GeneMark_model.39915_t
Valid prediction for GlimmerHMM_glimmerT_23330-T1
Valid prediction for HiQ_model.g15620.t1
Valid prediction for GlimmerHMM_glimmerT_23312-T1
Valid prediction for GlimmerHMM_glimmerT_23326-T1
Valid prediction for snap_scaffold_9-snap.2117-T1
Valid prediction for GeneMark_model.39911_t
Valid prediction for snap_scaffold_9-snap.2135-T1
Valid prediction for CodingQuarry_transcript_62138-T1
Valid prediction for GeneMark_model.39896_t
Valid prediction for HiQ_model.g15617.t1
Valid prediction for GlimmerHMM_glimmerT_23321-T1
Valid prediction for snap_scaffold_9-snap.2141-T1
Valid prediction for GeneMark_model.39916_t
Valid prediction for GeneMark_model.39919_t
Valid prediction for GeneMark_model.39934_t
Couldn't classify 83853, 83953
Sorry, prediction pasa_asmbl_55224.p1 fails validation.
(ATG)	 TC	82568-82638	GT	ACG
(GGA)	 AG	82982-83036	GT	AGG
(GCG)	 AG	83243-83318	GT	TGG
(ACA)	 AG	83853-83953	AT	GCA
-recovered pasa_asmbl_55224.p1, initial, 82568, 82638
-recovered pasa_asmbl_55224.p1, internal, 82982, 83036
-recovered pasa_asmbl_55224.p1, internal, 83243, 83318
Valid prediction for GeneMark_model.39948_t
Valid prediction for snap_scaffold_9-snap.2150-T1
Valid prediction for GeneMark_model.39901_t
Valid prediction for Augustus_model.g15613.t1
Valid prediction for GlimmerHMM_glimmerT_23319-T1
Valid prediction for snap_scaffold_9-snap.2126-T1
Valid prediction for GeneMark_model.39929_t
Valid prediction for GeneMark_model.39922_t
Valid prediction for snap_scaffold_9-snap.2123-T1
Valid prediction for snap_scaffold_9-snap.2138-T1
Valid prediction for GeneMark_model.39939_t
Valid prediction for GeneMark_model.39936_t
Valid prediction for snap_scaffold_9-snap.2137-T1
Valid prediction for GlimmerHMM_glimmerT_23323-T1
Valid prediction for GeneMark_model.39926_t
Valid prediction for GeneMark_model.39917_t
Valid prediction for GeneMark_model.39898_t
Valid prediction for GeneMark_model.39924_t
Valid prediction for snap_scaffold_9-snap.2148-T1
Valid prediction for snap_scaffold_9-snap.2155-T1
Valid prediction for snap_scaffold_9-snap.2159-T1
Couldn't classify 158010, 158133
Couldn't classify 159457, 159556
Sorry, prediction pasa_asmbl_55222.p1 fails validation.
(AAA)	 GC	158010-158133	GT	AGG
(ACC)	 AG	158516-158681	GT	CGG
(GAC)	 AG	159457-159556	CG	GAC
-recovered pasa_asmbl_55222.p1, internal, 158516, 158681
Valid prediction for GeneMark_model.39947_t
Valid prediction for GeneMark_model.39918_t
Valid prediction for GlimmerHMM_glimmerT_23315-T1
Couldn't classify 103585, 103673
Couldn't classify 112183, 112275
Sorry, prediction pasa_asmbl_55223.p1 fails validation.
(TGT)	 GC	103585-103673	GT	GAG
(GAT)	 AG	104013-104089	GT	AAG
(GCT)	 AG	106610-106686	GT	AGG
(CTG)	 AG	107345-107428	GT	AAG
(ACT)	 AG	109496-109666	GT	AGG
(GTC)	 AG	112183-112275	GG	GTG
-recovered pasa_asmbl_55223.p1, internal, 104013, 104089
-recovered pasa_asmbl_55223.p1, internal, 106610, 106686
-recovered pasa_asmbl_55223.p1, internal, 107345, 107428
-recovered pasa_asmbl_55223.p1, internal, 109496, 109666
Valid prediction for snap_scaffold_9-snap.2119-T1
Valid prediction for GeneMark_model.39949_t
Valid prediction for snap_scaffold_9-snap.2156-T1
Valid prediction for Augustus_model.g15610.t1
Valid prediction for GlimmerHMM_glimmerT_23332-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 31174, rend_intergenic: 24894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33789, rend_intergenic: 31420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51327, rend_intergenic: 49395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59067, rend_intergenic: 52585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64215, rend_intergenic: 59446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83512, rend_intergenic: 65290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88608, rend_intergenic: 86461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120618, rend_intergenic: 118113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124224, rend_intergenic: 122131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131776, rend_intergenic: 124535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133235, rend_intergenic: 132222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139414, rend_intergenic: 133268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147777, rend_intergenic: 139845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206710, rend_intergenic: 205234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 251394
-exon list size: 772


building trellis

0.1    
0.3    
0.4    
0.5    
0.6    
0.8    
0.9    
1.0    
1.2    
1.3    
1.4    
1.6    
1.7    
1.8    
1.9    
2.1    
2.2    
2.3    
2.5    
2.6    
2.7    
2.8    
3.0    
3.1    
3.2    
3.4    
3.5    
3.6    
3.7    
3.9    
4.0    
4.1    
4.3    
4.4    
4.5    
4.7    
4.8    
4.9    
5.0    
5.2    
5.3    
5.4    
5.6    
5.7    
5.8    
5.9    
6.1    
6.2    
6.3    
6.5    
6.6    
6.7    
6.8    
7.0    
7.1    
7.2    
7.4    
7.5    
7.6    
7.8    
7.9    
8.0    
8.1    
8.3    
8.4    
8.5    
8.7    
8.8    
8.9    
9.0    
9.2    
9.3    
9.4    
9.6    
9.7    
9.8    
9.9    
10.1    
10.2    
10.3    
10.5    
10.6    
10.7    
10.9    
11.0    
11.1    
11.2    
11.4    
11.5    
11.6    
11.8    
11.9    
12.0    
12.1    
12.3    
12.4    
12.5    
12.7    
12.8    
12.9    
13.0    
13.2    
13.3    
13.4    
13.6    
13.7    
13.8    
14.0    
14.1    
14.2    
14.3    
14.5    
14.6    
14.7    
14.9    
15.0    
15.1    
15.2    
15.4    
15.5    
15.6    
15.8    
15.9    
16.0    
16.1    
16.3    
16.4    
16.5    
16.7    
16.8    
16.9    
17.1    
17.2    
17.3    
17.4    
17.6    
17.7    
17.8    
18.0    
18.1    
18.2    
18.3    
18.5    
18.6    
18.7    
18.9    
19.0    
19.1    
19.3    
19.4    
19.5    
19.6    
19.8    
19.9    
20.0    
20.2    
20.3    
20.4    
20.5    
20.7    
20.8    
20.9    
21.1    
21.2    
21.3    
21.4    
21.6    
21.7    
21.8    
22.0    
22.1    
22.2    
22.4    
22.5    
22.6    
22.7    
22.9    
23.0    
23.1    
23.3    
23.4    
23.5    
23.6    
23.8    
23.9    
24.0    
24.2    
24.3    
24.4    
24.5    
24.7    
24.8    
24.9    
25.1    
25.2    
25.3    
25.5    
25.6    
25.7    
25.8    
26.0    
26.1    
26.2    
26.4    
26.5    
26.6    
26.7    
26.9    
27.0    
27.1    
27.3    
27.4    
27.5    
27.6    
27.8    
27.9    
28.0    
28.2    
28.3    
28.4    
28.6    
28.7    
28.8    
28.9    
29.1    
29.2    
29.3    
29.5    
29.6    
29.7    
29.8    
30.0    
30.1    
30.2    
30.4    
30.5    
30.6    
30.7    
30.9    
31.0    
31.1    
31.3    
31.4    
31.5    
31.7    
31.8    
31.9    
32.0    
32.2    
32.3    
32.4    
32.6    
32.7    
32.8    
32.9    
33.1    
33.2    
33.3    
33.5    
33.6    
33.7    
33.9    
34.0    
34.1    
34.2    
34.4    
34.5    
34.6    
34.8    
34.9    
35.0    
35.1    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.0    
36.2    
36.3    
36.4    
36.6    
36.7    
36.8    
37.0    
37.1    
37.2    
37.3    
37.5    
37.6    
37.7    
37.9    
38.0    
38.1    
38.2    
38.4    
38.5    
38.6    
38.8    
38.9    
39.0    
39.1    
39.3    
39.4    
39.5    
39.7    
39.8    
39.9    
40.1    
40.2    
40.3    
40.4    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.3    
41.5    
41.6    
41.7    
41.9    
42.0    
42.1    
42.2    
42.4    
42.5    
42.6    
42.8    
42.9    
43.0    
43.2    
43.3    
43.4    
43.5    
43.7    
43.8    
43.9    
44.1    
44.2    
44.3    
44.4    
44.6    
44.7    
44.8    
45.0    
45.1    
45.2    
45.3    
45.5    
45.6    
45.7    
45.9    
46.0    
46.1    
46.3    
46.4    
46.5    
46.6    
46.8    
46.9    
47.0    
47.2    
47.3    
47.4    
47.5    
47.7    
47.8    
47.9    
48.1    
48.2    
48.3    
48.4    
48.6    
48.7    
48.8    
49.0    
49.1    
49.2    
49.4    
49.5    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.5    
50.6    
50.8    
50.9    
51.0    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.1    
52.2    
52.3    
52.5    
52.6    
52.7    
52.8    
53.0    
53.1    
53.2    
53.4    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.6    
55.7    
55.8    
55.9    
56.1    
56.2    
56.3    
56.5    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.7    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.1    
60.2    
60.3    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.0    
63.2    
63.3    
63.4    
63.6    
63.7    
63.8    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.9    
65.0    
65.1    
65.2    
65.4    
65.5    
65.6    
65.8    
65.9    
66.0    
66.1    
66.3    
66.4    
66.5    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.4    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.9    
69.0    
69.1    
69.3    
69.4    
69.5    
69.6    
69.8    
69.9    
70.0    
70.2    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.7    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.6    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.4    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.0    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.3    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.1    
94.2    
94.3    
94.4    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.3    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 31174, rend_intergenic: 24894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33789, rend_intergenic: 31420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51327, rend_intergenic: 49395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59067, rend_intergenic: 52585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64215, rend_intergenic: 59446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83512, rend_intergenic: 65290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88608, rend_intergenic: 86461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120618, rend_intergenic: 118113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124224, rend_intergenic: 122131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131776, rend_intergenic: 124535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133235, rend_intergenic: 132222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139414, rend_intergenic: 133268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147777, rend_intergenic: 139845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206710, rend_intergenic: 205234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15140
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 237031 - 251394
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support