-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_9/scaffold_9_1035534-1318244 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.37624_t Valid prediction for snap_scaffold_9-snap.272-T1 Valid prediction for GeneMark_model.37561_t Valid prediction for GlimmerHMM_glimmerT_22058-T1 Valid prediction for GeneMark_model.37582_t Couldn't classify 189645, 189759 Couldn't classify 191763, 191926 Sorry, prediction pasa_asmbl_53783.p1 fails validation. (AAG) CC 189645-189759 GT CGG (ATG) AG 191497-191532 GT AGG (CTT) AG 191763-191926 CT GTC -recovered pasa_asmbl_53783.p1, initial, 191497, 191532 -recovered pasa_asmbl_53783.p1, internal, 191497, 191532 Valid prediction for CodingQuarry_transcript_61945-T1 Valid prediction for GeneMark_model.37592_t Valid prediction for Augustus_model.g14752.t1 Valid prediction for Augustus_model.g14750.t1 Valid prediction for GeneMark_model.37587_t Valid prediction for Augustus_model.g14756.t1 Valid prediction for snap_scaffold_9-snap.223-T1 Valid prediction for GeneMark_model.37552_t Valid prediction for snap_scaffold_9-snap.224-T1 Valid prediction for snap_scaffold_9-snap.248-T1 Valid prediction for GlimmerHMM_glimmerT_22067-T1 Valid prediction for GeneMark_model.37550_t Valid prediction for GeneMark_model.37622_t Valid prediction for HiQ_model.g14771.t1 Valid prediction for GlimmerHMM_glimmerT_22061-T1 Valid prediction for GeneMark_model.37618_t Valid prediction for GeneMark_model.37578_t Valid prediction for Augustus_model.g14765.t1 Valid prediction for GlimmerHMM_glimmerT_22068-T1 Valid prediction for snap_scaffold_9-snap.262-T1 Valid prediction for GeneMark_model.37615_t Valid prediction for GlimmerHMM_glimmerT_22050-T1 Valid prediction for Augustus_model.g14770.t1 Valid prediction for GeneMark_model.37576_t Valid prediction for Augustus_model.g14755.t1 Couldn't classify 177299, 177412 Sorry, prediction GeneMark_model.37599_t fails validation. (ATG) AG 175865-175872 GT ATG (AGA) AG 175913-175918 GC AGG (AGA) AG 175945-176031 GC AGG (CAG) AG 176059-176325 GT ACG (GAG) AG 176350-176478 GT GAG (ACA) AG 176528-176560 GC CAG (AGA) AG 176589-176663 GT GAG (GCA) AG 176687-176707 GT CAG (GAC) AG 176738-176746 GT GAG (AGA) AG 176769-176888 GT ACG (GAG) AG 176928-176972 GT GAG (GCA) AG 176996-177059 GT AGG (GGA) AG 177175-177272 GT AAG (ACA) AG 177299-177412 GT GAG -recovered GeneMark_model.37599_t, initial, 175865, 175872 -recovered GeneMark_model.37599_t, internal, 175865, 175872 -recovered GeneMark_model.37599_t, internal, 175913, 175918 -recovered GeneMark_model.37599_t, internal, 175945, 176031 -recovered GeneMark_model.37599_t, internal, 176059, 176325 -recovered GeneMark_model.37599_t, internal, 176350, 176478 -recovered GeneMark_model.37599_t, internal, 176528, 176560 -recovered GeneMark_model.37599_t, internal, 176589, 176663 -recovered GeneMark_model.37599_t, internal, 176687, 176707 -recovered GeneMark_model.37599_t, internal, 176738, 176746 -recovered GeneMark_model.37599_t, internal, 176769, 176888 -recovered GeneMark_model.37599_t, internal, 176928, 176972 -recovered GeneMark_model.37599_t, internal, 176996, 177059 -recovered GeneMark_model.37599_t, internal, 177175, 177272 -recovered GeneMark_model.37599_t, internal, 177299, 177412 Valid prediction for snap_scaffold_9-snap.259-T1 Valid prediction for GeneMark_model.37570_t Valid prediction for GeneMark_model.37546_t Valid prediction for GeneMark_model.37580_t Valid prediction for snap_scaffold_9-snap.254-T1 Valid prediction for snap_scaffold_9-snap.238-T1 Valid prediction for GlimmerHMM_glimmerT_22048-T1 Valid prediction for snap_scaffold_9-snap.228-T1 Valid prediction for GlimmerHMM_glimmerT_22064-T1 Valid prediction for snap_scaffold_9-snap.222-T1 Valid prediction for GeneMark_model.37625_t Valid prediction for GeneMark_model.37606_t Valid prediction for snap_scaffold_9-snap.247-T1 Valid prediction for Augustus_model.g14757.t1 Valid prediction for GeneMark_model.37557_t Valid prediction for snap_scaffold_9-snap.273-T1 Valid prediction for GeneMark_model.37608_t Valid prediction for GeneMark_model.37556_t Valid prediction for GeneMark_model.37563_t Valid prediction for GeneMark_model.37559_t Valid prediction for snap_scaffold_9-snap.226-T1 Valid prediction for snap_scaffold_9-snap.241-T1 Couldn't classify 208312, 208407 Sorry, prediction pasa_asmbl_53788.p1 fails validation. (ATG) TA 204492-204527 GT ATG (TTG) AG 204642-204745 GT GAG (GTG) AG 205827-205885 GT AGG (TCT) AG 206128-206247 GT CGG (GAA) AG 206467-206600 GT ATG (TTA) AG 207254-207319 GT AGG (GCT) AG 208312-208407 GT AGG -recovered pasa_asmbl_53788.p1, initial, 204492, 204527 add_exon() Sorry, pasa_asmbl_53788.p1 205827-205885-terminal-2 is invalid. -recovered pasa_asmbl_53788.p1, terminal, 205827, 205885 -recovered pasa_asmbl_53788.p1, internal, 204642, 204745 -recovered pasa_asmbl_53788.p1, internal, 205827, 205885 -recovered pasa_asmbl_53788.p1, internal, 206128, 206247 -recovered pasa_asmbl_53788.p1, internal, 206467, 206600 -recovered pasa_asmbl_53788.p1, internal, 207254, 207319 -recovered pasa_asmbl_53788.p1, internal, 208312, 208407 Valid prediction for GeneMark_model.37566_t Valid prediction for GeneMark_model.37604_t Valid prediction for GlimmerHMM_glimmerT_22046-T1 Valid prediction for GeneMark_model.37610_t Valid prediction for Augustus_model.g14762.t1 Valid prediction for snap_scaffold_9-snap.258-T1 Valid prediction for GeneMark_model.37554_t Valid prediction for snap_scaffold_9-snap.230-T1 Valid prediction for GeneMark_model.37596_t Valid prediction for GlimmerHMM_glimmerT_22044-T1 Valid prediction for GlimmerHMM_glimmerT_22060-T1 Valid prediction for GeneMark_model.37568_t Valid prediction for GeneMark_model.37611_t Valid prediction for Augustus_model.g14754.t1 Couldn't classify 196485, 196566 Couldn't classify 196999, 197117 Sorry, prediction pasa_asmbl_53784.p2 fails validation. (GGT) CA 196485-196566 GT GAG (GTC) AG 196677-196772 GT TGG (GTG) AG 196999-197117 GT ATG -recovered pasa_asmbl_53784.p2, internal, 196677, 196772 -recovered pasa_asmbl_53784.p2, internal, 196999, 197117 Valid prediction for GlimmerHMM_glimmerT_22053-T1 Valid prediction for GlimmerHMM_glimmerT_22045-T1 Valid prediction for snap_scaffold_9-snap.235-T1 Couldn't classify 250162, 250259 Sorry, prediction pasa_asmbl_53792.p1 fails validation. (AAT) AG 250162-250259 GT AAG (GTT) AG 250504-250576 GT AGG (GAG) AG 250696-251406 AT GAA -recovered pasa_asmbl_53792.p1, terminal, 250696, 251406 -recovered pasa_asmbl_53792.p1, internal, 250162, 250259 -recovered pasa_asmbl_53792.p1, internal, 250504, 250576 Valid prediction for GeneMark_model.37548_t Valid prediction for snap_scaffold_9-snap.256-T1 Valid prediction for GeneMark_model.37584_t Valid prediction for GeneMark_model.37609_t Valid prediction for snap_scaffold_9-snap.243-T1 Valid prediction for snap_scaffold_9-snap.246-T1 Valid prediction for snap_scaffold_9-snap.270-T1 Valid prediction for GlimmerHMM_glimmerT_22069-T1 Valid prediction for GeneMark_model.37616_t Valid prediction for GeneMark_model.37602_t Valid prediction for snap_scaffold_9-snap.250-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.37620_t Valid prediction for GeneMark_model.37574_t Valid prediction for Augustus_model.g14763.t1 Valid prediction for snap_scaffold_9-snap.265-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.37589_t Couldn't classify 200121, 200255 Couldn't classify 201690, 201806 Sorry, prediction pasa_asmbl_53786.p1 fails validation. (GCA) AG 200121-200255 GT ACG (GCC) AG 200690-200791 GT GAG (GAG) AG 200949-201085 GT AGG (GGA) AG 201285-201378 GT AGG (GCC) AG 201690-201806 AG AGA -recovered pasa_asmbl_53786.p1, internal, 200121, 200255 -recovered pasa_asmbl_53786.p1, internal, 200690, 200791 -recovered pasa_asmbl_53786.p1, internal, 200949, 201085 -recovered pasa_asmbl_53786.p1, internal, 201285, 201378 Valid prediction for snap_scaffold_9-snap.244-T1 Valid prediction for Augustus_model.g14767.t1 Valid prediction for GeneMark_model.37613_t Valid prediction for Augustus_model.g14753.t1 Valid prediction for snap_scaffold_9-snap.232-T1 Valid prediction for GlimmerHMM_glimmerT_22049-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g14772.t1 Valid prediction for GeneMark_model.37605_t Valid prediction for GeneMark_model.37623_t Valid prediction for snap_scaffold_9-snap.229-T1 Valid prediction for GlimmerHMM_glimmerT_22072-T1 Valid prediction for snap_scaffold_9-snap.225-T1 Valid prediction for GlimmerHMM_glimmerT_22056-T1 Valid prediction for snap_scaffold_9-snap.239-T1 Valid prediction for GeneMark_model.37575_t Valid prediction for GeneMark_model.37577_t Valid prediction for GeneMark_model.37619_t Valid prediction for snap_scaffold_9-snap.227-T1 Valid prediction for GeneMark_model.37547_t Valid prediction for GlimmerHMM_glimmerT_22070-T1 Valid prediction for GeneMark_model.37572_t Valid prediction for GlimmerHMM_glimmerT_22052-T1 Valid prediction for snap_scaffold_9-snap.240-T1 Valid prediction for snap_scaffold_9-snap.242-T1 Valid prediction for GeneMark_model.37621_t Valid prediction for GlimmerHMM_glimmerT_22051-T1 Valid prediction for Augustus_model.g14751.t1 Valid prediction for Augustus_model.g14758.t1 Valid prediction for Augustus_model.g14760.t1 Valid prediction for GlimmerHMM_glimmerT_22054-T1 Valid prediction for Augustus_model.g14769.t1 Valid prediction for GeneMark_model.37551_t Couldn't classify 149080, 149185 Couldn't classify 154972, 155098 Sorry, prediction pasa_asmbl_54790.p1 fails validation. (GAT) CT 149080-149185 GT TGG (GTC) AG 150147-150228 GT AGG (GTA) AG 151105-151245 GT AAG (GTA) AG 151375-151480 GT AGG (GAA) AG 153205-153292 GT AGG (ATC) AG 153705-153760 GT CAG (GTG) AG 154238-154302 GT AGG (CAT) AG 154972-155098 GA GGG -recovered pasa_asmbl_54790.p1, internal, 150147, 150228 -recovered pasa_asmbl_54790.p1, internal, 151105, 151245 -recovered pasa_asmbl_54790.p1, internal, 151375, 151480 -recovered pasa_asmbl_54790.p1, internal, 153205, 153292 -recovered pasa_asmbl_54790.p1, internal, 153705, 153760 -recovered pasa_asmbl_54790.p1, internal, 154238, 154302 Valid prediction for GeneMark_model.37553_t Valid prediction for GeneMark_model.37595_t Valid prediction for GlimmerHMM_glimmerT_22071-T1 Valid prediction for snap_scaffold_9-snap.261-T1 Valid prediction for snap_scaffold_9-snap.253-T1 Valid prediction for GlimmerHMM_glimmerT_22047-T1 Valid prediction for GeneMark_model.37581_t Valid prediction for Augustus_model.g14766.t1 Valid prediction for GeneMark_model.37560_t Valid prediction for Augustus_model.g14761.t1 Valid prediction for snap_scaffold_9-snap.269-T1 Valid prediction for GeneMark_model.37607_t Valid prediction for GeneMark_model.37555_t Valid prediction for GlimmerHMM_glimmerT_22066-T1 Valid prediction for snap_scaffold_9-snap.255-T1 Valid prediction for GeneMark_model.37591_t Valid prediction for snap_scaffold_9-snap.249-T1 Valid prediction for GeneMark_model.37601_t Valid prediction for snap_scaffold_9-snap.267-T1 Valid prediction for GlimmerHMM_glimmerT_22059-T1 Valid prediction for snap_scaffold_9-snap.234-T1 Valid prediction for GeneMark_model.37586_t Valid prediction for Augustus_model.g14759.t1 Valid prediction for snap_scaffold_9-snap.233-T1 Valid prediction for GeneMark_model.37565_t Valid prediction for snap_scaffold_9-snap.245-T1 Valid prediction for GeneMark_model.37569_t Valid prediction for GeneMark_model.37612_t Valid prediction for GeneMark_model.37562_t Valid prediction for snap_scaffold_9-snap.268-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.37583_t Valid prediction for GeneMark_model.37617_t Valid prediction for GeneMark_model.37579_t Valid prediction for snap_scaffold_9-snap.263-T1 Valid prediction for snap_scaffold_9-snap.252-T1 Valid prediction for GeneMark_model.37549_t Valid prediction for GeneMark_model.37593_t Valid prediction for snap_scaffold_9-snap.221-T1 Valid prediction for snap_scaffold_9-snap.251-T1 Valid prediction for snap_scaffold_9-snap.271-T1 Valid prediction for snap_scaffold_9-snap.257-T1 Valid prediction for GeneMark_model.37603_t Valid prediction for GlimmerHMM_glimmerT_22055-T1 Valid prediction for GlimmerHMM_glimmerT_22063-T1 Valid prediction for snap_scaffold_9-snap.231-T1 Valid prediction for Augustus_model.g14764.t1 Valid prediction for GeneMark_model.37567_t Valid prediction for Augustus_model.g14768.t1 Valid prediction for GeneMark_model.37573_t Valid prediction for GeneMark_model.37571_t Valid prediction for GlimmerHMM_glimmerT_22057-T1 Valid prediction for snap_scaffold_9-snap.260-T1 Valid prediction for snap_scaffold_9-snap.237-T1 Valid prediction for snap_scaffold_9-snap.236-T1 Valid prediction for GeneMark_model.37600_t Valid prediction for GeneMark_model.37590_t Valid prediction for GeneMark_model.37614_t Valid prediction for GeneMark_model.37598_t Valid prediction for GlimmerHMM_glimmerT_22065-T1 Valid prediction for snap_scaffold_9-snap.266-T1 Valid prediction for GeneMark_model.37558_t Valid prediction for GlimmerHMM_glimmerT_22062-T1 Valid prediction for snap_scaffold_9-snap.264-T1 Valid prediction for GeneMark_model.37588_t Valid prediction for GeneMark_model.37585_t Valid prediction for GlimmerHMM_glimmerT_22073-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22816, rend_intergenic: 11300 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27940, rend_intergenic: 26372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 31750, rend_intergenic: 29893 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35017, rend_intergenic: 32222 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37071, rend_intergenic: 35092 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43105, rend_intergenic: 37653 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49444, rend_intergenic: 43933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66356, rend_intergenic: 54958 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71835, rend_intergenic: 66824 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84916, rend_intergenic: 81820 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96214, rend_intergenic: 85011 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107501, rend_intergenic: 100082 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114295, rend_intergenic: 108292 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119047, rend_intergenic: 114706 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124334, rend_intergenic: 119090 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134363, rend_intergenic: 125716 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140601, rend_intergenic: 134439 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154425, rend_intergenic: 141646 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 173879, rend_intergenic: 161306 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195071, rend_intergenic: 189675 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219371, rend_intergenic: 195362 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 250588, rend_intergenic: 249211 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 261461, rend_intergenic: 250749 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 281853, rend_intergenic: 272112 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 282711 -exon list size: 1295 building trellis 0.1 0.2 0.2 0.3 0.4 0.5 0.5 0.6 0.7 0.8 0.8 0.9 1.0 1.1 1.2 1.2 1.3 1.4 1.5 1.5 1.6 1.7 1.8 1.9 1.9 2.0 2.1 2.2 2.2 2.3 2.4 2.5 2.5 2.6 2.7 2.8 2.9 2.9 3.0 3.1 3.2 3.2 3.3 3.4 3.5 3.5 3.6 3.7 3.8 3.9 3.9 4.0 4.1 4.2 4.2 4.3 4.4 4.5 4.5 4.6 4.7 4.8 4.9 4.9 5.0 5.1 5.2 5.2 5.3 5.4 5.5 5.6 5.6 5.7 5.8 5.9 5.9 6.0 6.1 6.2 6.2 6.3 6.4 6.5 6.6 6.6 6.7 6.8 6.9 6.9 7.0 7.1 7.2 7.2 7.3 7.4 7.5 7.6 7.6 7.7 7.8 7.9 7.9 8.0 8.1 8.2 8.2 8.3 8.4 8.5 8.6 8.6 8.7 8.8 8.9 8.9 9.0 9.1 9.2 9.3 9.3 9.4 9.5 9.6 9.6 9.7 9.8 9.9 9.9 10.0 10.1 10.2 10.3 10.3 10.4 10.5 10.6 10.6 10.7 10.8 10.9 10.9 11.0 11.1 11.2 11.3 11.3 11.4 11.5 11.6 11.6 11.7 11.8 11.9 12.0 12.0 12.1 12.2 12.3 12.3 12.4 12.5 12.6 12.6 12.7 12.8 12.9 13.0 13.0 13.1 13.2 13.3 13.3 13.4 13.5 13.6 13.6 13.7 13.8 13.9 14.0 14.0 14.1 14.2 14.3 14.3 14.4 14.5 14.6 14.6 14.7 14.8 14.9 15.0 15.0 15.1 15.2 15.3 15.3 15.4 15.5 15.6 15.7 15.7 15.8 15.9 16.0 16.0 16.1 16.2 16.3 16.3 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.0 17.1 17.2 17.3 17.3 17.4 17.5 17.6 17.7 17.7 17.8 17.9 18.0 18.0 18.1 18.2 18.3 18.4 18.4 18.5 18.6 18.7 18.7 18.8 18.9 19.0 19.0 19.1 19.2 19.3 19.4 19.4 19.5 19.6 19.7 19.7 19.8 19.9 20.0 20.0 20.1 20.2 20.3 20.4 20.4 20.5 20.6 20.7 20.7 20.8 20.9 21.0 21.0 21.1 21.2 21.3 21.4 21.4 21.5 21.6 21.7 21.7 21.8 21.9 22.0 22.1 22.1 22.2 22.3 22.4 22.4 22.5 22.6 22.7 22.7 22.8 22.9 23.0 23.1 23.1 23.2 23.3 23.4 23.4 23.5 23.6 23.7 23.7 23.8 23.9 24.0 24.1 24.1 24.2 24.3 24.4 24.4 24.5 24.6 24.7 24.7 24.8 24.9 25.0 25.1 25.1 25.2 25.3 25.4 25.4 25.5 25.6 25.7 25.8 25.8 25.9 26.0 26.1 26.1 26.2 26.3 26.4 26.4 26.5 26.6 26.7 26.8 26.8 26.9 27.0 27.1 27.1 27.2 27.3 27.4 27.4 27.5 27.6 27.7 27.8 27.8 27.9 28.0 28.1 28.1 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.8 28.8 28.9 29.0 29.1 29.1 29.2 29.3 29.4 29.5 29.5 29.6 29.7 29.8 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.5 30.5 30.6 30.7 30.8 30.8 30.9 31.0 31.1 31.1 31.2 31.3 31.4 31.5 31.5 31.6 31.7 31.8 31.8 31.9 32.0 32.1 32.2 32.2 32.3 32.4 32.5 32.5 32.6 32.7 32.8 32.8 32.9 33.0 33.1 33.2 33.2 33.3 33.4 33.5 33.5 33.6 33.7 33.8 33.8 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.5 34.5 34.6 34.7 34.8 34.8 34.9 35.0 35.1 35.2 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.8 35.9 35.9 36.0 36.1 36.2 36.2 36.3 36.4 36.5 36.5 36.6 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.9 37.9 38.0 38.1 38.2 38.2 38.3 38.4 38.5 38.6 38.6 38.7 38.8 38.9 38.9 39.0 39.1 39.2 39.2 39.3 39.4 39.5 39.6 39.6 39.7 39.8 39.9 39.9 40.0 40.1 40.2 40.2 40.3 40.4 40.5 40.6 40.6 40.7 40.8 40.9 40.9 41.0 41.1 41.2 41.2 41.3 41.4 41.5 41.6 41.6 41.7 41.8 41.9 41.9 42.0 42.1 42.2 42.3 42.3 42.4 42.5 42.6 42.6 42.7 42.8 42.9 42.9 43.0 43.1 43.2 43.3 43.3 43.4 43.5 43.6 43.6 43.7 43.8 43.9 43.9 44.0 44.1 44.2 44.3 44.3 44.4 44.5 44.6 44.6 44.7 44.8 44.9 44.9 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.6 45.6 45.7 45.8 45.9 46.0 46.0 46.1 46.2 46.3 46.3 46.4 46.5 46.6 46.6 46.7 46.8 46.9 47.0 47.0 47.1 47.2 47.3 47.3 47.4 47.5 47.6 47.6 47.7 47.8 47.9 48.0 48.0 48.1 48.2 48.3 48.3 48.4 48.5 48.6 48.7 48.7 48.8 48.9 49.0 49.0 49.1 49.2 49.3 49.3 49.4 49.5 49.6 49.7 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.3 50.4 50.5 50.6 50.7 50.7 50.8 50.9 51.0 51.0 51.1 51.2 51.3 51.3 51.4 51.5 51.6 51.7 51.7 51.8 51.9 52.0 52.0 52.1 52.2 52.3 52.4 52.4 52.5 52.6 52.7 52.7 52.8 52.9 53.0 53.0 53.1 53.2 53.3 53.4 53.4 53.5 53.6 53.7 53.7 53.8 53.9 54.0 54.0 54.1 54.2 54.3 54.4 54.4 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.1 55.1 55.2 55.3 55.4 55.4 55.5 55.6 55.7 55.7 55.8 55.9 56.0 56.1 56.1 56.2 56.3 56.4 56.4 56.5 56.6 56.7 56.7 56.8 56.9 57.0 57.1 57.1 57.2 57.3 57.4 57.4 57.5 57.6 57.7 57.7 57.8 57.9 58.0 58.1 58.1 58.2 58.3 58.4 58.4 58.5 58.6 58.7 58.8 58.8 58.9 59.0 59.1 59.1 59.2 59.3 59.4 59.4 59.5 59.6 59.7 59.8 59.8 59.9 60.0 60.1 60.1 60.2 60.3 60.4 60.4 60.5 60.6 60.7 60.8 60.8 60.9 61.0 61.1 61.1 61.2 61.3 61.4 61.4 61.5 61.6 61.7 61.8 61.8 61.9 62.0 62.1 62.1 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.4 63.5 63.5 63.6 63.7 63.8 63.8 63.9 64.0 64.1 64.1 64.2 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.8 64.9 65.0 65.1 65.2 65.2 65.3 65.4 65.5 65.5 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.2 66.2 66.3 66.4 66.5 66.5 66.6 66.7 66.8 66.8 66.9 67.0 67.1 67.2 67.2 67.3 67.4 67.5 67.5 67.6 67.7 67.8 67.8 67.9 68.0 68.1 68.2 68.2 68.3 68.4 68.5 68.5 68.6 68.7 68.8 68.9 68.9 69.0 69.1 69.2 69.2 69.3 69.4 69.5 69.5 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.2 70.3 70.4 70.5 70.5 70.6 70.7 70.8 70.9 70.9 71.0 71.1 71.2 71.2 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.9 71.9 72.0 72.1 72.2 72.2 72.3 72.4 72.5 72.6 72.6 72.7 72.8 72.9 72.9 73.0 73.1 73.2 73.2 73.3 73.4 73.5 73.6 73.6 73.7 73.8 73.9 73.9 74.0 74.1 74.2 74.2 74.3 74.4 74.5 74.6 74.6 74.7 74.8 74.9 74.9 75.0 75.1 75.2 75.3 75.3 75.4 75.5 75.6 75.6 75.7 75.8 75.9 75.9 76.0 76.1 76.2 76.3 76.3 76.4 76.5 76.6 76.6 76.7 76.8 76.9 76.9 77.0 77.1 77.2 77.3 77.3 77.4 77.5 77.6 77.6 77.7 77.8 77.9 77.9 78.0 78.1 78.2 78.3 78.3 78.4 78.5 78.6 78.6 78.7 78.8 78.9 79.0 79.0 79.1 79.2 79.3 79.3 79.4 79.5 79.6 79.6 79.7 79.8 79.9 80.0 80.0 80.1 80.2 80.3 80.3 80.4 80.5 80.6 80.6 80.7 80.8 80.9 81.0 81.0 81.1 81.2 81.3 81.3 81.4 81.5 81.6 81.6 81.7 81.8 81.9 82.0 82.0 82.1 82.2 82.3 82.3 82.4 82.5 82.6 82.7 82.7 82.8 82.9 83.0 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.7 83.7 83.8 83.9 84.0 84.0 84.1 84.2 84.3 84.3 84.4 84.5 84.6 84.7 84.7 84.8 84.9 85.0 85.0 85.1 85.2 85.3 85.4 85.4 85.5 85.6 85.7 85.7 85.8 85.9 86.0 86.0 86.1 86.2 86.3 86.4 86.4 86.5 86.6 86.7 86.7 86.8 86.9 87.0 87.0 87.1 87.2 87.3 87.4 87.4 87.5 87.6 87.7 87.7 87.8 87.9 88.0 88.0 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.7 88.7 88.8 88.9 89.0 89.1 89.1 89.2 89.3 89.4 89.4 89.5 89.6 89.7 89.7 89.8 89.9 90.0 90.1 90.1 90.2 90.3 90.4 90.4 90.5 90.6 90.7 90.7 90.8 90.9 91.0 91.1 91.1 91.2 91.3 91.4 91.4 91.5 91.6 91.7 91.8 91.8 91.9 92.0 92.1 92.1 92.2 92.3 92.4 92.4 92.5 92.6 92.7 92.8 92.8 92.9 93.0 93.1 93.1 93.2 93.3 93.4 93.4 93.5 93.6 93.7 93.8 93.8 93.9 94.0 94.1 94.1 94.2 94.3 94.4 94.4 94.5 94.6 94.7 94.8 94.8 94.9 95.0 95.1 95.1 95.2 95.3 95.4 95.5 95.5 95.6 95.7 95.8 95.8 95.9 96.0 96.1 96.1 96.2 96.3 96.4 96.5 96.5 96.6 96.7 96.8 96.8 96.9 97.0 97.1 97.1 97.2 97.3 97.4 97.5 97.5 97.6 97.7 97.8 97.8 97.9 98.0 98.1 98.1 98.2 98.3 98.4 98.5 98.5 98.6 98.7 98.8 98.8 98.9 99.0 99.1 99.2 99.2 99.3 99.4 99.5 99.5 99.6 99.7 99.8 99.8 99.9 -found 58 predictions from path traversal Error with prediction: snap lend_intergenic: 22816, rend_intergenic: 11300 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27940, rend_intergenic: 26372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 31750, rend_intergenic: 29893 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35017, rend_intergenic: 32222 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37071, rend_intergenic: 35092 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43105, rend_intergenic: 37653 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49444, rend_intergenic: 43933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66356, rend_intergenic: 54958 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71835, rend_intergenic: 66824 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84916, rend_intergenic: 81820 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96214, rend_intergenic: 85011 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107501, rend_intergenic: 100082 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114295, rend_intergenic: 108292 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119047, rend_intergenic: 114706 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124334, rend_intergenic: 119090 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134363, rend_intergenic: 125716 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140601, rend_intergenic: 134439 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154425, rend_intergenic: 141646 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 173879, rend_intergenic: 161306 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195071, rend_intergenic: 189675 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219371, rend_intergenic: 195362 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 250588, rend_intergenic: 249211 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 261461, rend_intergenic: 250749 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 281853, rend_intergenic: 272112 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 31 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 19188 -exon list size: 110 building trellis 0.9 1.8 2.7 3.6 4.5 5.4 6.2 7.1 8.0 8.9 9.8 10.7 11.6 12.5 13.4 14.3 15.2 16.1 17.0 17.9 18.8 19.6 20.5 21.4 22.3 23.2 24.1 25.0 25.9 26.8 27.7 28.6 29.5 30.4 31.2 32.1 33.0 33.9 34.8 35.7 36.6 37.5 38.4 39.3 40.2 41.1 42.0 42.9 43.8 44.6 45.5 46.4 47.3 48.2 49.1 50.0 50.9 51.8 52.7 53.6 54.5 55.4 56.2 57.1 58.0 58.9 59.8 60.7 61.6 62.5 63.4 64.3 65.2 66.1 67.0 67.9 68.8 69.6 70.5 71.4 72.3 73.2 74.1 75.0 75.9 76.8 77.7 78.6 79.5 80.4 81.2 82.1 83.0 83.9 84.8 85.7 86.6 87.5 88.4 89.3 90.2 91.1 92.0 92.9 93.8 94.6 95.5 96.4 97.3 98.2 99.1 -found 5 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support