-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_899

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_899-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1344, 1367
Sorry, prediction GeneMark_model.108573_t fails validation.
(AAA)	 AG	1344-1367	GT	AGG
(AGG)	 AG	1390-1419	GT	AGG
(AGA)	 AG	1442-1471	GT	AGG
(AAG)	 AG	1500-1538	GT	AAG
(TGA)	 AG	1580-1594	GT	GAG
(AAG)	 AG	1620-1661	GT	AGG
(AAT)	 AG	1684-1689	GT	GGG
(GGT)	 AG	1725-1745	GT	AGG
(AAG)	 AG	1774-1821	GT	GAG
(AAG)	 AG	1857-1868	GT	GGG
(CAG)	 AG	1910-1930	GT	AGG
(ACA)	 AG	1967-2014	GT	AGG
(ACA)	 AG	2080-2361	GT	GAG
(GAG)	 AG	2384-2440	GT	CTG
(CGA)	 AG	2628-2639	GT	AGG
(AAG)	 AG	2670-2693	GT	AGG
(AAG)	 AG	2722-2799	GT	AGG
(AAG)	 AG	2852-2875	GT	AGG
(AAG)	 AG	2908-2937	GC	GGG
(AAA)	 AG	2982-3017	GT	TGG
(GGA)	 AG	3039-3050	GT	AGG
(AAG)	 AG	3071-3106	GT	GAG
(ATG)	 AG	3129-3132	GA	GAG
add_exon() Sorry, GeneMark_model.108573_t 3071-3106-terminal-1 is invalid.
-recovered GeneMark_model.108573_t, terminal, 3071, 3106
-recovered GeneMark_model.108573_t, terminal, 3129, 3132
-recovered GeneMark_model.108573_t, internal, 1344, 1367
-recovered GeneMark_model.108573_t, internal, 1390, 1419
-recovered GeneMark_model.108573_t, internal, 1442, 1471
-recovered GeneMark_model.108573_t, internal, 1500, 1538
-recovered GeneMark_model.108573_t, internal, 1580, 1594
-recovered GeneMark_model.108573_t, internal, 1620, 1661
-recovered GeneMark_model.108573_t, internal, 1684, 1689
-recovered GeneMark_model.108573_t, internal, 1725, 1745
-recovered GeneMark_model.108573_t, internal, 1774, 1821
-recovered GeneMark_model.108573_t, internal, 1857, 1868
-recovered GeneMark_model.108573_t, internal, 1910, 1930
-recovered GeneMark_model.108573_t, internal, 1967, 2014
-recovered GeneMark_model.108573_t, internal, 2080, 2361
-recovered GeneMark_model.108573_t, internal, 2384, 2440
-recovered GeneMark_model.108573_t, internal, 2628, 2639
-recovered GeneMark_model.108573_t, internal, 2670, 2693
-recovered GeneMark_model.108573_t, internal, 2722, 2799
-recovered GeneMark_model.108573_t, internal, 2852, 2875
-recovered GeneMark_model.108573_t, internal, 2908, 2937
-recovered GeneMark_model.108573_t, internal, 2982, 3017
-recovered GeneMark_model.108573_t, internal, 3039, 3050
-recovered GeneMark_model.108573_t, internal, 3071, 3106
Valid prediction for GlimmerHMM_glimmerT_62324-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4011
-exon list size: 57


building trellis

1.7    
3.4    
5.1    
6.8    
8.5    
10.2    
11.9    
13.6    
15.3    
16.9    
18.6    
20.3    
22.0    
23.7    
25.4    
27.1    
28.8    
30.5    
32.2    
33.9    
35.6    
37.3    
39.0    
40.7    
42.4    
44.1    
45.8    
47.5    
49.2    
50.8    
52.5    
54.2    
55.9    
57.6    
59.3    
61.0    
62.7    
64.4    
66.1    
67.8    
69.5    
71.2    
72.9    
74.6    
76.3    
78.0    
79.7    
81.4    
83.1    
84.7    
86.4    
88.1    
89.8    
91.5    
93.2    
94.9    
96.6    
98.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support