-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_898

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2866, 2968
Sorry, prediction GeneMark_model.108572_t fails validation.
(ATG)	 AG	1875-1981	GT	TGG
(GAG)	 AG	2866-2968	GT	GGG
add_exon() Sorry, GeneMark_model.108572_t 1875-1981-initial-1 is invalid.
-recovered GeneMark_model.108572_t, initial, 1875, 1981
-recovered GeneMark_model.108572_t, internal, 1875, 1981
-recovered GeneMark_model.108572_t, internal, 2866, 2968
Couldn't classify 3807, 4014
Sorry, prediction HiQ_model.g41428.t1 fails validation.
(ATG)	 AT	1904-1975	GT	AGG
(GAG)	 AG	2866-2968	GT	GGG
(GTG)	 AG	3807-4014		CA
-recovered HiQ_model.g41428.t1, initial, 1904, 1975
-recovered HiQ_model.g41428.t1, internal, 2866, 2968
Couldn't classify 1835, 1975
Couldn't classify 3807, 3862
Sorry, prediction pasa_asmbl_53723.p1 fails validation.
(GTG)	 GT	1835-1975	GT	AGG
(GAG)	 AG	2866-2968	GT	GGG
(GTG)	 AG	3807-3862	GT	ACG
-recovered pasa_asmbl_53723.p1, internal, 2866, 2968
-recovered pasa_asmbl_53723.p1, internal, 3807, 3862
Couldn't classify 3807, 3982
Sorry, prediction snap_scaffold_898-snap.1-T1 fails validation.
(ATG)	 AG	1875-1975	GT	AGG
(GAG)	 AG	2866-2968	GT	GGG
(GTG)	 AG	3807-3982	GT	TGG
add_exon() Sorry, snap_scaffold_898-snap.1-T1 1875-1975-initial-1 is invalid.
-recovered snap_scaffold_898-snap.1-T1, initial, 1875, 1975
-recovered snap_scaffold_898-snap.1-T1, internal, 1875, 1975
-recovered snap_scaffold_898-snap.1-T1, internal, 2866, 2968
-recovered snap_scaffold_898-snap.1-T1, internal, 3807, 3982

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4014
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support