-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_897

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62323-T1
Couldn't classify 64, 228
Sorry, prediction GeneMark_model.108570_t fails validation.
(GAC)	 AG	64-228	GT	CTG
(CGT)	 AG	359-522	GT	GGG
(GTT)	 AG	545-635	CG	GAC
-recovered GeneMark_model.108570_t, terminal, 545, 635
-recovered GeneMark_model.108570_t, internal, 64, 228
-recovered GeneMark_model.108570_t, internal, 359, 522
Couldn't classify 46, 183
Couldn't classify 3458, 3709
Sorry, prediction snap_scaffold_897-snap.1-T1 fails validation.
(GCC)	 AG	46-183	GT	GGG
(CGT)	 AG	359-740	GT	CGG
(GCT)	 AG	3458-3709	GT	AGG
-recovered snap_scaffold_897-snap.1-T1, internal, 46, 183
-recovered snap_scaffold_897-snap.1-T1, internal, 359, 740
-recovered snap_scaffold_897-snap.1-T1, internal, 3458, 3709

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 43, 84
Sorry, prediction GeneMark_model.108571_t fails validation.
(GCT)	 AG	43-84	GT	GAG
(ATT)	 AG	160-216	GT	TGG
(TCT)	 AG	407-537	GT	CAG
(CGG)	 AG	674-716	GT	AGG
(GGG)	 AG	758-763	GT	GAG
(GAC)	 AG	812-976	GT	AGG
(GAG)	 AG	1000-1011	GT	GGG
(GGA)	 AG	1114-1167	GT	AGG
(GGG)	 AG	1266-1337	GT	AAG
(TGA)	 AG	1981-2058	GT	CAG
(AGA)	 AG	2667-2714	GT	AAG
(ATA)	 AG	2862-2865	AG	AGA
-recovered GeneMark_model.108571_t, terminal, 43, 84
-recovered GeneMark_model.108571_t, terminal, 2862, 2865
-recovered GeneMark_model.108571_t, internal, 43, 84
-recovered GeneMark_model.108571_t, internal, 160, 216
-recovered GeneMark_model.108571_t, internal, 407, 537
-recovered GeneMark_model.108571_t, internal, 674, 716
-recovered GeneMark_model.108571_t, internal, 758, 763
-recovered GeneMark_model.108571_t, internal, 812, 976
-recovered GeneMark_model.108571_t, internal, 1000, 1011
-recovered GeneMark_model.108571_t, internal, 1114, 1167
-recovered GeneMark_model.108571_t, internal, 1266, 1337
-recovered GeneMark_model.108571_t, internal, 1981, 2058
-recovered GeneMark_model.108571_t, internal, 2667, 2714
Valid prediction for Augustus_model.g41427.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4022
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support