-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_896

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41426.t1
Couldn't classify 469, 496
Couldn't classify 3866, 3980
Sorry, prediction snap_scaffold_896-snap.1-T1 fails validation.
(ACT)	 AG	469-496	GT	CGG
(AGA)	 AG	1095-1309	GT	AGG
(ACG)	 AG	2719-2862	GT	ACG
(ACC)	 AG	3362-3518	GT	AGG
(ACC)	 AG	3649-3676	GT	ACG
(TGG)	 AG	3866-3980	GT	AGG
-recovered snap_scaffold_896-snap.1-T1, internal, 469, 496
-recovered snap_scaffold_896-snap.1-T1, internal, 1095, 1309
-recovered snap_scaffold_896-snap.1-T1, internal, 2719, 2862
-recovered snap_scaffold_896-snap.1-T1, internal, 3362, 3518
-recovered snap_scaffold_896-snap.1-T1, internal, 3649, 3676
-recovered snap_scaffold_896-snap.1-T1, internal, 3866, 3980
Couldn't classify 3362, 3518
Sorry, prediction GlimmerHMM_glimmerT_62322-T1 fails validation.
(ATG)	 CC	1079-1309	GT	AGG
(ACG)	 AG	2719-2862	GT	ACG
(ACC)	 AG	3362-3518	GT	AGG
-recovered GlimmerHMM_glimmerT_62322-T1, initial, 1079, 1309
-recovered GlimmerHMM_glimmerT_62322-T1, internal, 2719, 2862
-recovered GlimmerHMM_glimmerT_62322-T1, internal, 3362, 3518
Couldn't classify 3934, 3980
Sorry, prediction GeneMark_model.108569_t fails validation.
(ATG)	 CC	1079-1309	GT	AGG
(GCT)	 AG	1330-1352	GT	GGG
(GCT)	 AG	1401-1409	GT	GGG
(TGA)	 AG	2464-2476	GT	GGG
(ACG)	 AG	2719-2862	GT	ACG
(ACC)	 AG	3362-3518	GT	AGG
(TAG)	 AG	3934-3980	GT	AGG
-recovered GeneMark_model.108569_t, initial, 1079, 1309
-recovered GeneMark_model.108569_t, internal, 1330, 1352
-recovered GeneMark_model.108569_t, internal, 1401, 1409
-recovered GeneMark_model.108569_t, internal, 2464, 2476
-recovered GeneMark_model.108569_t, internal, 2719, 2862
-recovered GeneMark_model.108569_t, internal, 3362, 3518
-recovered GeneMark_model.108569_t, internal, 3934, 3980

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2655, 2950
Sorry, prediction snap_scaffold_896-snap.2-T1 fails validation.
(ATG)	 AT	553-688	GT	AGG
(CCT)	 AG	2655-2950	GT	TGG
-recovered snap_scaffold_896-snap.2-T1, initial, 553, 688
-recovered snap_scaffold_896-snap.2-T1, internal, 2655, 2950

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3980, rend_intergenic: 1078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4027
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3980, rend_intergenic: 1078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support