-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_895

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108567_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3987, 3999
Sorry, prediction GeneMark_model.108566_t fails validation.
(ATG)	 GG	3832-3878	GT	AGG
(GAG)	 AG	3906-3965	GT	AGG
(GAA)	 AG	3987-3999	GT	GAG
-recovered GeneMark_model.108566_t, initial, 3832, 3878
-recovered GeneMark_model.108566_t, internal, 3906, 3965
-recovered GeneMark_model.108566_t, internal, 3987, 3999
Valid prediction for GlimmerHMM_glimmerT_62321-T1
Couldn't classify 33, 214
Couldn't classify 578, 687
Sorry, prediction snap_scaffold_895-snap.1-T1 fails validation.
(GGT)	 AG	33-214	GT	CAG
(GGG)	 AG	578-687	GT	CAG
-recovered snap_scaffold_895-snap.1-T1, internal, 33, 214
-recovered snap_scaffold_895-snap.1-T1, internal, 578, 687
Valid prediction for HiQ_model.g41425.t1
Couldn't classify 33, 214
Sorry, prediction GeneMark_model.108568_t fails validation.
(GGT)	 AG	33-214	GT	CAG
(GGG)	 AG	578-691	GT	GAG
-recovered GeneMark_model.108568_t, terminal, 578, 691
-recovered GeneMark_model.108568_t, internal, 33, 214
-recovered GeneMark_model.108568_t, internal, 578, 691

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4029
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support