-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_894

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3450, 3629
Sorry, prediction GlimmerHMM_glimmerT_62320-T1 fails validation.
(ATG)	 AC	2338-2418	GT	AGG
(TCG)	 AG	3450-3629	GT	AGG
-recovered GlimmerHMM_glimmerT_62320-T1, initial, 2338, 2418
-recovered GlimmerHMM_glimmerT_62320-T1, internal, 3450, 3629
Valid prediction for GeneMark_model.108563_t
Couldn't classify 3688, 3807
Sorry, prediction GeneMark_model.108565_t fails validation.
(ATG)	 CC	2920-2949	GT	CAG
(TCG)	 AG	3450-3667	GC	GAG
(GGG)	 AG	3688-3807	GT	GGG
-recovered GeneMark_model.108565_t, initial, 2920, 2949
-recovered GeneMark_model.108565_t, internal, 3450, 3667
-recovered GeneMark_model.108565_t, internal, 3688, 3807
Couldn't classify 3450, 3629
Sorry, prediction Augustus_model.g41424.t1 fails validation.
(ATG)	 AT	1735-1793	GT	CTG
(GCC)	 AG	1999-2028	GT	TGG
(CGC)	 AG	2307-2418	GT	AGG
(TCG)	 AG	3450-3629	GT	AGG
-recovered Augustus_model.g41424.t1, initial, 1735, 1793
-recovered Augustus_model.g41424.t1, internal, 1999, 2028
-recovered Augustus_model.g41424.t1, internal, 2307, 2418
-recovered Augustus_model.g41424.t1, internal, 3450, 3629
Couldn't classify 1999, 2028
Couldn't classify 3450, 3824
Sorry, prediction snap_scaffold_894-snap.1-T1 fails validation.
(GCC)	 AG	1999-2028	GT	TGG
(CGC)	 AG	2307-2418	GT	AGG
(AAC)	 AG	2453-2643	GT	ATG
(AAC)	 AG	2868-2949	GT	CAG
(TCG)	 AG	3450-3824	GT	GGG
-recovered snap_scaffold_894-snap.1-T1, internal, 1999, 2028
-recovered snap_scaffold_894-snap.1-T1, internal, 2307, 2418
-recovered snap_scaffold_894-snap.1-T1, internal, 2453, 2643
-recovered snap_scaffold_894-snap.1-T1, internal, 2868, 2949
-recovered snap_scaffold_894-snap.1-T1, internal, 3450, 3824

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 423, 516
Couldn't classify 1699, 1749
Sorry, prediction snap_scaffold_894-snap.2-T1 fails validation.
(CGT)	 AG	423-516	GT	CCG
(GGA)	 AG	577-619	GT	GGG
(GAG)	 AG	1467-1613	GT	AGG
(GTG)	 AG	1699-1749	GT	AGG
-recovered snap_scaffold_894-snap.2-T1, internal, 423, 516
-recovered snap_scaffold_894-snap.2-T1, internal, 577, 619
-recovered snap_scaffold_894-snap.2-T1, internal, 1467, 1613
-recovered snap_scaffold_894-snap.2-T1, internal, 1699, 1749
Valid prediction for GeneMark_model.108564_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3824, rend_intergenic: 2296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4044
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3824, rend_intergenic: 2296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support