-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_89

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_89-snap.2-T1
Couldn't classify 1349, 1480
Sorry, prediction GeneMark_model.106499_t fails validation.
(AGA)	 AG	1349-1480	GT	GCG
(AGG)	 AG	1611-1751	GC	GAG
(AAA)	 AG	1774-1857	GT	GAG
(ACC)	 AG	1886-1952	GT	AGG
(GCG)	 AG	1994-2181	GT	ACG
(AGA)	 AG	2275-2343	GT	CGG
(AGA)	 AG	2554-2703	GT	GGG
(AGA)	 AG	2826-2865	CC	AAC
-recovered GeneMark_model.106499_t, terminal, 1774, 1857
-recovered GeneMark_model.106499_t, terminal, 2826, 2865
-recovered GeneMark_model.106499_t, internal, 1349, 1480
-recovered GeneMark_model.106499_t, internal, 1611, 1751
-recovered GeneMark_model.106499_t, internal, 1774, 1857
-recovered GeneMark_model.106499_t, internal, 1886, 1952
-recovered GeneMark_model.106499_t, internal, 1994, 2181
-recovered GeneMark_model.106499_t, internal, 2275, 2343
-recovered GeneMark_model.106499_t, internal, 2554, 2703
Valid prediction for GeneMark_model.106502_t
Valid prediction for GeneMark_model.106501_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61256-T1
Valid prediction for GeneMark_model.106500_t
Valid prediction for snap_scaffold_89-snap.3-T1
Valid prediction for snap_scaffold_89-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4060, rend_intergenic: 1565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 17911
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4060, rend_intergenic: 1565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support